diff options
Diffstat (limited to 'test/dev_tests.rb')
| -rw-r--r-- | test/dev_tests.rb | 25 |
1 files changed, 24 insertions, 1 deletions
diff --git a/test/dev_tests.rb b/test/dev_tests.rb index d63b8fe..fb3fecf 100644 --- a/test/dev_tests.rb +++ b/test/dev_tests.rb @@ -38,6 +38,29 @@ class TestQuick < MiniTest::Test -lmm 2 -no-check -maf 0.1 \ -o BXDLMM") - expect("output/BXDLMM.assoc.txt",[[2,9,"1.234747e-01"]]) + expect("output/BXDLMM.assoc.txt",[[2,9,"1.234747e-01"], + [:max,9,"9.997119e-01"]]) + end + + def test_mouse_hs1940_loco + assert gemma("-g ./example/mouse_hs1940.geno.txt.gz \ + -p ./example/mouse_hs1940.pheno.txt \ + -a ./example/mouse_hs1940.anno.txt \ + -snps ./example/mouse_hs1940_snps.txt \ + -nind 400 -loco 1 -gk \ + -o mouse_hs1940_loco") + + assert gemma("-g ./example/mouse_hs1940.geno.txt.gz \ + -p ./example/mouse_hs1940.pheno.txt \ + -n 1 \ + -loco 1 \ + -a ./example/mouse_hs1940.anno.txt \ + -k ./output/mouse_hs1940_loco.cXX.txt \ + -snps ./example/mouse_hs1940_snps.txt \ + -lmm \ + -nind 400 -no-check \ + -o mouse_hs1940_loco") + expect("output/mouse_hs1940_loco.assoc.txt",[[2,9,"-3.073643e+02"], + [:max,11,"9.716047e-01"]]) end end |