diff options
Diffstat (limited to 'test/dev_tests.rb')
| -rw-r--r-- | test/dev_tests.rb | 11 |
1 files changed, 11 insertions, 0 deletions
diff --git a/test/dev_tests.rb b/test/dev_tests.rb index fc2f7bb..49068dc 100644 --- a/test/dev_tests.rb +++ b/test/dev_tests.rb @@ -40,6 +40,17 @@ class TestQuick < MiniTest::Test expect("output/BXDLMM.assoc.txt",[[2,9,"1.234747e-01"], [:max,"p_lrt","9.997119e-01"]]) + + gemma("-g ./example/BXD_geno.txt.gz \ + -p ./example/BXD_pheno.txt \ + -c ./example/BXD_covariates2.txt \ + -a ./example/BXD_snps.txt \ + -k ./output/BXD.cXX.txt \ + -lmm 9 -no-check -maf 0.1 \ + -o BXDLMM9") + + expect("output/BXDLMM9.assoc.txt",[[:max,"l_mle","0.7531109"], + [:max,"p_lrt","9.997119e-01"]]) end def test_mouse_hs1940_loco |