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Diffstat (limited to 'test/dev_test_suite.sh')
| -rwxr-xr-x | test/dev_test_suite.sh | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/test/dev_test_suite.sh b/test/dev_test_suite.sh index ad743ff..2fcd26d 100755 --- a/test/dev_test_suite.sh +++ b/test/dev_test_suite.sh @@ -4,6 +4,21 @@ gemma=../bin/gemma # gemmaopts="-debug -strict" gemmaopts="-debug" +testLinearModel() { + $gemma $gemmaopts -g ../example/mouse_hs1940.geno.txt.gz \ + -p ../example/mouse_hs1940.pheno.txt \ + -n 1 \ + -a ../example/mouse_hs1940.anno.txt \ + -lm \ + -o mouse_hs1940_CD8_lm + assertEquals 0 $? + grep "total computation time" < output/mouse_hs1940_CD8_lm.log.txt + assertEquals 0 $? + outfn=output/mouse_hs1940_CD8_lm.assoc.txt + assertEquals "118459" `wc -w < $outfn` + assertEquals "4053667109.69" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn` +} + # Related to https://github.com/genetics-statistics/GEMMA/issues/78 testBXDStandardRelatednessMatrixKSingularError() { outn=BXDerr |