diff options
Diffstat (limited to 'src/varcov.h')
| -rw-r--r-- | src/varcov.h | 60 |
1 files changed, 29 insertions, 31 deletions
diff --git a/src/varcov.h b/src/varcov.h index 4a1eb3a..47b4f9d 100644 --- a/src/varcov.h +++ b/src/varcov.h @@ -19,45 +19,43 @@ #ifndef __VARCOV_H__ #define __VARCOV_H__ -#include "gsl/gsl_vector.h" #include "gsl/gsl_matrix.h" -#include "param.h" +#include "gsl/gsl_vector.h" #include "io.h" +#include "param.h" using namespace std; class VARCOV { public: - // IO-related parameters. - string file_out; - string path_out; - string file_geno; - string file_bfile; - int d_pace; - - vector<int> indicator_idv; - vector<int> indicator_snp; - - vector<SNPINFO> snpInfo; - - double time_opt; - - // Class-specific parameters. - double window_cm; - size_t window_bp; - size_t window_ns; - - // Main functions. - void CopyFromParam (PARAM &cPar); - void CopyToParam (PARAM &cPar); - void CalcNB (vector<SNPINFO> &snpInfo_sort); - void WriteCov (const int flag, const vector<SNPINFO> &snpInfo_sub, - const vector<vector<double> > &Cov_mat); - void AnalyzeBimbam (); - void AnalyzePlink (); + // IO-related parameters. + string file_out; + string path_out; + string file_geno; + string file_bfile; + int d_pace; + + vector<int> indicator_idv; + vector<int> indicator_snp; + + vector<SNPINFO> snpInfo; + + double time_opt; + + // Class-specific parameters. + double window_cm; + size_t window_bp; + size_t window_ns; + + // Main functions. + void CopyFromParam(PARAM &cPar); + void CopyToParam(PARAM &cPar); + void CalcNB(vector<SNPINFO> &snpInfo_sort); + void WriteCov(const int flag, const vector<SNPINFO> &snpInfo_sub, + const vector<vector<double>> &Cov_mat); + void AnalyzeBimbam(); + void AnalyzePlink(); }; #endif - - |