diff options
Diffstat (limited to 'src/ldr.h')
| -rw-r--r-- | src/ldr.h | 26 |
1 files changed, 13 insertions, 13 deletions
@@ -1,22 +1,22 @@ /* Genome-wide Efficient Mixed Model Association (GEMMA) Copyright (C) 2011-2017, Xiang Zhou - + This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - + This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. - + You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. */ -#ifndef __LDR_H__ +#ifndef __LDR_H__ #define __LDR_H__ #include <vector> @@ -29,16 +29,16 @@ using namespace std; class LDR { -public: +public: // IO-related parameters. - int a_mode; + int a_mode; size_t d_pace; - + string file_bfile; string file_geno; string file_out; string path_out; - + // Summary statistics. size_t ni_total, ns_total; // Total number of individuals & SNPs. size_t ni_test, ns_test; // Number of individuals & SNPs used @@ -52,16 +52,16 @@ public: // Sequence indicator for SNPs: 0 ignored because of (a) maf, // (b) miss, (c) non-poly; 1 available for analysis. vector<int> indicator_snp; - + vector<SNPINFO> snpInfo; // Record SNP information. - + // Not included in PARAM. - gsl_rng *gsl_r; - + gsl_rng *gsl_r; + // Main functions. void CopyFromParam (PARAM &cPar); void CopyToParam (PARAM &cPar); - + void VB(const vector<vector<unsigned char> > &Xt, const gsl_matrix *W_gsl, const gsl_vector *y_gsl); }; |