diff options
Diffstat (limited to 'src/gemma_io.cpp')
| -rw-r--r-- | src/gemma_io.cpp | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/src/gemma_io.cpp b/src/gemma_io.cpp index cfa92d1..959e1f5 100644 --- a/src/gemma_io.cpp +++ b/src/gemma_io.cpp @@ -406,13 +406,14 @@ bool ReadFile_pheno(const string &file_pheno, return false; } - string line; - char *ch_ptr; - - string id; + // string id; double p; vector<double> pheno_row; + + string line; + char *ch_ptr; + vector<int> indicator_pheno_row; size_t p_max = *max_element(p_column.begin(), p_column.end()); @@ -1516,7 +1517,7 @@ gsl_matrix *mdb_calc_kin(const string file_geno, bool is_loco, const int k_mode) env.set_mapsize(1UL * 1024UL * 1024UL * 1024UL * 1024UL); /* 10 GiB */ env.set_max_dbs(10); - env.open("example/mouse_hs1940.geno.mdb", MDB_RDONLY | MDB_NOSUBDIR, 0664); + env.open(file_geno.c_str(), MDB_RDONLY | MDB_NOSUBDIR, 0664); size_t ni_total = 0, num_markers = 0; { |
