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-rw-r--r--src/gemma_io.cpp2
1 files changed, 2 insertions, 0 deletions
diff --git a/src/gemma_io.cpp b/src/gemma_io.cpp
index 818c5e8..fad3e47 100644
--- a/src/gemma_io.cpp
+++ b/src/gemma_io.cpp
@@ -1483,12 +1483,14 @@ bool BimbamKin(const string file_geno, const set<string> ksnps,
// and transpose
// FIXME: the following is very slow
+ debug_msg("begin transpose");
for (size_t i = 0; i < ni_total; ++i) {
for (size_t j = 0; j < i; ++j) {
d = gsl_matrix_get(matrix_kin, j, i);
gsl_matrix_set(matrix_kin, i, j, d);
}
}
+ debug_msg("end transpose");
// GSL is faster - and there are even faster methods
// enforce_gsl(gsl_matrix_transpose(matrix_kin));