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Diffstat (limited to 'doc/developers/profiling.md')
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diff --git a/doc/developers/profiling.md b/doc/developers/profiling.md deleted file mode 100644 index 0d26453..0000000 --- a/doc/developers/profiling.md +++ /dev/null @@ -1,30 +0,0 @@ -# Profiling - -gperftools (formerly the Google profiler) is included in the .guix-dev -startup script. Compile gemma for profiling: - - make clean - make profile - -Run the profiler - - env CPUPROFILE=/tmp/prof.out ./bin/gemma -g ./example/mouse_hs1940.geno.txt.gz -p ./example/mouse_hs1940.pheno.txt -gk -o mouse_hs1940 - pprof ./bin/gemma /tmp/prof.out - -and `top` shows - -``` -Welcome to pprof! For help, type 'help'. -(pprof) top -Total: 720 samples - 103 14.3% 14.3% 103 14.3% dgemm_kernel_ZEN - 39 5.4% 19.7% 79 11.0% ____strtod_l_internal - 37 5.1% 24.9% 53 7.4% __printf_fp_l - 36 5.0% 29.9% 36 5.0% __sched_yield - 34 4.7% 34.6% 34 4.7% __strlen_avx2 - 31 4.3% 38.9% 31 4.3% __strspn_sse42 - 26 3.6% 42.5% 116 16.1% ReadFile_geno - 25 3.5% 46.0% 26 3.6% _int_malloc - 23 3.2% 49.2% 23 3.2% gsl_vector_set - 18 2.5% 51.7% 18 2.5% __strcspn_sse42 -``` |