diff options
| -rw-r--r-- | src/version.h | 6 | ||||
| -rwxr-xr-x | test/dev_test_suite.sh | 17 |
2 files changed, 20 insertions, 3 deletions
diff --git a/src/version.h b/src/version.h index 6492b1a..7a7557d 100644 --- a/src/version.h +++ b/src/version.h @@ -1,5 +1,5 @@ // version.h generated by GEMMA scripts/gen_version_info.sh -#define GEMMA_VERSION "0.98.3" -#define GEMMA_DATE "2020-11-28" +#define GEMMA_VERSION "0.98.4" +#define GEMMA_DATE "2020-12-15" #define GEMMA_YEAR "2020" -#define GEMMA_PROFILE "" +#define GEMMA_PROFILE "/gnu/store/8mkllydvkgfy6ydlrymrx8wj0dy1x6lm-profile" diff --git a/test/dev_test_suite.sh b/test/dev_test_suite.sh index 903c72f..676e0b3 100755 --- a/test/dev_test_suite.sh +++ b/test/dev_test_suite.sh @@ -82,6 +82,23 @@ testBXDLMMLikelihoodRatio() { assertEquals "3088458213" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.0f",$sum }' $outfn` } +testBXDLMM9LikelihoodRatio() { + # Test for GeneNetwork output + outn=BXD_LMM_LR + $gemma $gemmaopts -g ../example/BXD_geno.txt.gz \ + -p ../example/BXD_pheno.txt \ + -c ../example/BXD_covariates2.txt \ + -a ../example/BXD_snps.txt \ + -k ./output/BXD.cXX.txt \ + -lmm 9 -no-check -maf 0.1 \ + -o $outn + assertEquals 0 $? + + outfn=output/$outn.assoc.txt + assertEquals "80498" `wc -w < $outfn` + assertEquals "3088496565" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.0f",$sum }' $outfn` +} + testCenteredRelatednessMatrixissue188() { outn=issue188 rm -f output/$outn.* |