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| author | Pjotr Prins | 2017-07-09 08:42:07 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2017-07-09 08:42:07 +0000 |
| commit | d2ea25218f28c01afcb2480960fdf090318a864b (patch) | |
| tree | b1775de13ef3554ac9d48e76b7add3c6439ec362 /test | |
| parent | 0792aee7269e4bf1c2903267e17a12dfebd14884 (diff) | |
| download | pangemma-d2ea25218f28c01afcb2480960fdf090318a864b.tar.gz | |
Tests: more tests
Diffstat (limited to 'test')
| -rwxr-xr-x | test/test_suite.sh | 10 |
1 files changed, 10 insertions, 0 deletions
diff --git a/test/test_suite.sh b/test/test_suite.sh index 8adc5c9..763c981 100755 --- a/test/test_suite.sh +++ b/test/test_suite.sh @@ -5,6 +5,9 @@ gemma=../bin/gemma testCenteredRelatednessMatrixK() { $gemma -g ../example/mouse_hs1940.geno.txt.gz -p ../example/mouse_hs1940.pheno.txt \ -a ../example/mouse_hs1940.anno.txt -gk -o mouse_hs1940 + assertEquals 0 $? + grep "total computation time" < output/mouse_hs1940.log.txt + assertEquals 0 $? assertEquals "3763600" `wc -w < output/mouse_hs1940.cXX.txt` # assertEquals "15f680c" `md5sum < output/mouse_hs1940.cXX.txt | head -c 7` assertEquals "0.335" `head -c 5 output/mouse_hs1940.cXX.txt` @@ -15,6 +18,9 @@ testUnivariateLinearMixedModel() { $gemma -g ../example/mouse_hs1940.geno.txt.gz -p ../example/mouse_hs1940.pheno.txt -n 1 \ -a ../example/mouse_hs1940.anno.txt -k ./output/mouse_hs1940.cXX.txt -lmm \ -o mouse_hs1940_CD8_lmm + assertEquals 0 $? + grep "total computation time" < output/mouse_hs1940_CD8_lmm.log.txt + assertEquals 0 $? assertEquals "118459" `wc -w < output/mouse_hs1940_CD8_lmm.assoc.txt` assertEquals "92047" `awk '{s+=substr($1,0,6)}END{print s}' output/mouse_hs1940_CD8_lmm.assoc.txt` } @@ -23,6 +29,10 @@ testMultivariateLinearMixedModel() { $gemma -g ../example/mouse_hs1940.geno.txt.gz -p ../example/mouse_hs1940.pheno.txt \ -n 1 6 -a ../example/mouse_hs1940.anno.txt -k ./output/mouse_hs1940.cXX.txt \ -lmm -o mouse_hs1940_CD8MCH_lmm + assertEquals 0 $? + grep "total computation time" < output/mouse_hs1940_CD8MCH_lmm.log.txt + assertEquals 0 $? + outfn=output/mouse_hs1940_CD8MCH_lmm.assoc.txt assertEquals "139867" `wc -w < $outfn` assertEquals "92079" `awk '{s+=substr($1,0,6)}END{print s}' $outfn` |