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| author | Pjotr Prins | 2020-09-29 11:55:38 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2020-09-29 13:04:09 +0100 |
| commit | 3197705e0757dbdcc709de5ef31442f86e18979d (patch) | |
| tree | 7bf0fbfa6bc88a04b9ca7d11f616ed4ae83c7668 /test | |
| parent | 1cd41f0f6f1fe401d6bdc33a5c33794adb1452a6 (diff) | |
| download | pangemma-3197705e0757dbdcc709de5ef31442f86e18979d.tar.gz | |
Travis-CI is passing!
Fixes #216
Fixes #233
Diffstat (limited to 'test')
| -rwxr-xr-x | test/dev_test_suite.sh | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/test/dev_test_suite.sh b/test/dev_test_suite.sh index 1fb3ba6..0e36218 100755 --- a/test/dev_test_suite.sh +++ b/test/dev_test_suite.sh @@ -16,7 +16,7 @@ testLinearModel() { assertEquals 0 $? outfn=output/mouse_hs1940_CD8_lm.assoc.txt assertEquals "118459" `wc -w < $outfn` - assertEquals "4053667109.67" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn` + assertEquals "4053667110" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.0f",$sum }' $outfn` } # Related to https://github.com/genetics-statistics/GEMMA/issues/78 @@ -46,7 +46,7 @@ testBXDStandardRelatednessMatrixK() { assertEquals 0 $? outfn=output/$outn.cXX.txt assertEquals "198" `wc -l < $outfn` - assertEquals "-116.13" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn` + assertEquals "-116" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.0f",$sum }' $outfn` } testBXDLMLikelihoodRatio() { @@ -62,7 +62,7 @@ testBXDLMLikelihoodRatio() { outfn=output/$outn.assoc.txt assertEquals "95134" `wc -w < $outfn` - assertEquals "3089042886.08" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn` + assertEquals "3089042886" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.0f",$sum }' $outfn` } testBXDLMMLikelihoodRatio() { @@ -78,7 +78,7 @@ testBXDLMMLikelihoodRatio() { outfn=output/$outn.assoc.txt assertEquals "73180" `wc -w < $outfn` - assertEquals "3088458212.86" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn` + assertEquals "3088458213" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.0f",$sum }' $outfn` } testCenteredRelatednessMatrixissue188() { @@ -87,7 +87,7 @@ testCenteredRelatednessMatrixissue188() { $gemma $gemmaopts -b data/issue188/2000 -gk -o $outn assertEquals 0 $? outfn=output/$outn.cXX.txt - assertEquals "193.78" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn` + assertEquals "194" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.0f",$sum }' $outfn` } testLMMissue188() { |