diff options
| author | Pjotr Prins | 2025-12-02 09:04:28 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2025-12-02 09:04:28 +0100 |
| commit | a1e252bfc7fc874fb4c442288b4b33e232d5002e (patch) | |
| tree | 240d7bd5910ee39f273221265b2064f7ec60fcd5 /test/performance | |
| parent | db417c280c570dc153ec72b3874b11c23761f969 (diff) | |
| download | pangemma-a1e252bfc7fc874fb4c442288b4b33e232d5002e.tar.gz | |
Started generating output
Diffstat (limited to 'test/performance')
| -rw-r--r-- | test/performance/releases.org | 12 |
1 files changed, 12 insertions, 0 deletions
diff --git a/test/performance/releases.org b/test/performance/releases.org index 082cdde..0b1c638 100644 --- a/test/performance/releases.org +++ b/test/performance/releases.org @@ -5,6 +5,18 @@ Measurements taken on a recent AMD Ryzen 7 3700X 8-Core Processor @2.195GHz. +Introducing mdb genotype format led to a 30% speed increase on the small mouse set: + +#+begin_src sh +real 0m6.403s +user 0m11.529s +sys 0m6.325s +#+end_src sh + +that may not look like much, but we are only starting! + +** Picking up the pieces + We are facing a time regression. premake5 gmake2 && make verbose=1 config=release -j 8 gemma && time LD_LIBRARY_PATH=$GUIX_ENVIRONMENT/lib ./build/bin/Release/gemma -g ./example/mouse_hs1940.geno.txt.gz -p ./example/mouse_hs1940.pheno.txt -n 1 -a ./example/mouse_hs1940.anno.txt -k ./output/result.cXX.txt -lmm -no-check |