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| author | Pjotr Prins | 2018-07-27 01:29:50 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2018-07-27 01:29:50 +0000 |
| commit | 70f419673d5d3e49a3eada70c70c2d284b502d7b (patch) | |
| tree | f4e9457e2d90bce195fdb3fae286611d554e1d6a /test/dev_test_suite.sh | |
| parent | 15cf2344547bcd4d300aba22a96e9897153e50e1 (diff) | |
| download | pangemma-70f419673d5d3e49a3eada70c70c2d284b502d7b.tar.gz | |
Add floating point hardware checking for Intel on GNU compilers
When using the -check function (the default) it is enabled for Kinship
computation and LM/LMM up to individual SNP computation. This means
there can no longer be NaN values for matrices that are reused for every
SNP, but it is possible to have NaN for individual SNPs.
Fixes #161
Diffstat (limited to 'test/dev_test_suite.sh')
| -rwxr-xr-x | test/dev_test_suite.sh | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/test/dev_test_suite.sh b/test/dev_test_suite.sh index 0d3d8a0..ad743ff 100755 --- a/test/dev_test_suite.sh +++ b/test/dev_test_suite.sh @@ -14,6 +14,7 @@ testBXDStandardRelatednessMatrixKSingularError() { -c ../example/BXD_covariates.txt \ -a ../example/BXD_snps.txt \ -gk \ + -no-check \ -o $outn assertEquals 22 $? # should show singular error } @@ -56,7 +57,7 @@ testBXDLMMLikelihoodRatio() { -c ../example/BXD_covariates2.txt \ -a ../example/BXD_snps.txt \ -k ./output/BXD.cXX.txt \ - -lmm 2 -maf 0.1 \ + -lmm 2 -no-check -maf 0.1 \ -o $outn assertEquals 0 $? @@ -89,7 +90,7 @@ testUnivariateLinearMixedModelLOCO1() { -a ../example/mouse_hs1940.anno.txt \ -k ./output/mouse_hs1940_LOCO1.cXX.txt \ -snps ../example/mouse_hs1940_snps.txt -lmm \ - -nind 400 \ + -nind 400 -no-check \ -o $outn assertEquals 0 $? grep "total computation time" < output/$outn.log.txt |