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authorPjotr Prins2017-10-05 09:18:59 +0000
committerPjotr Prins2017-10-05 09:19:09 +0000
commit530488454ae6a35b098b81b45581f88f02d6de0e (patch)
tree7ee31c78a678ea4fa364267a9de8564faf4b159e /test/dev_test_suite.sh
parente90c2d25cdb77d41d6587188db9e61cb988f2c78 (diff)
downloadpangemma-530488454ae6a35b098b81b45581f88f02d6de0e.tar.gz
Adding debug statements on entering functions and added test for issue 58
Diffstat (limited to 'test/dev_test_suite.sh')
-rwxr-xr-xtest/dev_test_suite.sh7
1 files changed, 4 insertions, 3 deletions
diff --git a/test/dev_test_suite.sh b/test/dev_test_suite.sh
index 9e49251..2bd432e 100755
--- a/test/dev_test_suite.sh
+++ b/test/dev_test_suite.sh
@@ -2,7 +2,6 @@
gemma=../bin/gemma
-
# Related to https://github.com/genetics-statistics/GEMMA/issues/78
testBXDStandardRelatednessMatrixKSingularError() {
outn=BXDerr
@@ -65,10 +64,12 @@ testCenteredRelatednessMatrixKLOCO1() {
testUnivariateLinearMixedModelLOCO1() {
outn=mouse_hs1940_CD8_LOCO1_lmm
rm -f output/$outn.*
- $gemma -g ../example/mouse_hs1940.geno.txt.gz -p ../example/mouse_hs1940.pheno.txt \
+ $gemma -g ../example/mouse_hs1940.geno.txt.gz \
+ -p ../example/mouse_hs1940.pheno.txt \
-n 1 \
-loco 1 \
- -a ../example/mouse_hs1940.anno.txt -k ./output/mouse_hs1940_LOCO1.cXX.txt \
+ -a ../example/mouse_hs1940.anno.txt \
+ -k ./output/mouse_hs1940_LOCO1.cXX.txt \
-snps ../example/mouse_hs1940_snps.txt -lmm \
-nind 400 \
-debug \