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authorPeter Carbonetto2017-08-02 13:07:23 -0500
committerGitHub2017-08-02 13:07:23 -0500
commitadaf9557f776ca274b51e921af0542ef1b84eb61 (patch)
tree8f7581bec20eb815848d02f926cb949ed038008b /src/varcov.h
parent84360c191f418bf8682b35e0c8235fcc3bd19a06 (diff)
parent1e49e7a27d0f4b811a87c64db1e875779766f6b0 (diff)
downloadpangemma-adaf9557f776ca274b51e921af0542ef1b84eb61.tar.gz
Merge pull request #62 from genenetwork/spacing
Spacing and coding style.
Diffstat (limited to 'src/varcov.h')
-rw-r--r--src/varcov.h60
1 files changed, 29 insertions, 31 deletions
diff --git a/src/varcov.h b/src/varcov.h
index 4a1eb3a..47b4f9d 100644
--- a/src/varcov.h
+++ b/src/varcov.h
@@ -19,45 +19,43 @@
#ifndef __VARCOV_H__
#define __VARCOV_H__
-#include "gsl/gsl_vector.h"
#include "gsl/gsl_matrix.h"
-#include "param.h"
+#include "gsl/gsl_vector.h"
#include "io.h"
+#include "param.h"
using namespace std;
class VARCOV {
public:
- // IO-related parameters.
- string file_out;
- string path_out;
- string file_geno;
- string file_bfile;
- int d_pace;
-
- vector<int> indicator_idv;
- vector<int> indicator_snp;
-
- vector<SNPINFO> snpInfo;
-
- double time_opt;
-
- // Class-specific parameters.
- double window_cm;
- size_t window_bp;
- size_t window_ns;
-
- // Main functions.
- void CopyFromParam (PARAM &cPar);
- void CopyToParam (PARAM &cPar);
- void CalcNB (vector<SNPINFO> &snpInfo_sort);
- void WriteCov (const int flag, const vector<SNPINFO> &snpInfo_sub,
- const vector<vector<double> > &Cov_mat);
- void AnalyzeBimbam ();
- void AnalyzePlink ();
+ // IO-related parameters.
+ string file_out;
+ string path_out;
+ string file_geno;
+ string file_bfile;
+ int d_pace;
+
+ vector<int> indicator_idv;
+ vector<int> indicator_snp;
+
+ vector<SNPINFO> snpInfo;
+
+ double time_opt;
+
+ // Class-specific parameters.
+ double window_cm;
+ size_t window_bp;
+ size_t window_ns;
+
+ // Main functions.
+ void CopyFromParam(PARAM &cPar);
+ void CopyToParam(PARAM &cPar);
+ void CalcNB(vector<SNPINFO> &snpInfo_sort);
+ void WriteCov(const int flag, const vector<SNPINFO> &snpInfo_sub,
+ const vector<vector<double>> &Cov_mat);
+ void AnalyzeBimbam();
+ void AnalyzePlink();
};
#endif
-
-