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| author | Peter Carbonetto | 2017-05-25 22:20:02 -0500 |
|---|---|---|
| committer | Peter Carbonetto | 2017-05-25 22:20:02 -0500 |
| commit | 40e338ab5d1754f36b6a12b6f29eee74792e3b3e (patch) | |
| tree | a5e47c0d1c5b383a737a604f594db238785ea387 /src/varcov.h | |
| parent | 991cba8fc62c792bfe43afb8659154e97bc8f309 (diff) | |
| download | pangemma-40e338ab5d1754f36b6a12b6f29eee74792e3b3e.tar.gz | |
A couple small adjustments to README.
Diffstat (limited to 'src/varcov.h')
| -rw-r--r-- | src/varcov.h | 15 |
1 files changed, 6 insertions, 9 deletions
diff --git a/src/varcov.h b/src/varcov.h index b380b8c..a7fcd9c 100644 --- a/src/varcov.h +++ b/src/varcov.h @@ -1,6 +1,6 @@ /* Genome-wide Efficient Mixed Model Association (GEMMA) - Copyright (C) 2011 Xiang Zhou + Copyright (C) 2011-2017 Xiang Zhou This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by @@ -22,7 +22,6 @@ #include "gsl/gsl_vector.h" #include "gsl/gsl_matrix.h" - #ifdef FORCE_FLOAT #include "param_float.h" #include "io_float.h" @@ -33,13 +32,10 @@ using namespace std; - - - class VARCOV { public: - // IO related parameters + // IO related parameters. string file_out; string path_out; string file_geno; @@ -53,16 +49,17 @@ public: double time_opt; - // Class specific parameters + // Class specific parameters. double window_cm; size_t window_bp; size_t window_ns; - // Main functions + // Main functions. void CopyFromParam (PARAM &cPar); void CopyToParam (PARAM &cPar); void CalcNB (vector<SNPINFO> &snpInfo_sort); - void WriteCov (const int flag, const vector<SNPINFO> &snpInfo_sub, const vector<vector<double> > &Cov_mat); + void WriteCov (const int flag, const vector<SNPINFO> &snpInfo_sub, + const vector<vector<double> > &Cov_mat); void AnalyzeBimbam (); void AnalyzePlink (); }; |