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| author | Peter Carbonetto | 2017-10-09 16:23:05 -0500 |
|---|---|---|
| committer | GitHub | 2017-10-09 16:23:05 -0500 |
| commit | ab2a1830659ac970d97c107f145105fb410eb219 (patch) | |
| tree | 14d3cab14fca4b68eb0916992344b8248a380a61 /src/varcov.cpp | |
| parent | 1e99b37e42edb7981b44f1409cc3e55a47057878 (diff) | |
| parent | 86323ccaf26ad0a3b706a67a0014dd04b9965823 (diff) | |
| download | pangemma-ab2a1830659ac970d97c107f145105fb410eb219.tar.gz | |
Merge pull request #92 from genenetwork/gemma-master
Fixed for a number of outstanding issues.
Diffstat (limited to 'src/varcov.cpp')
| -rw-r--r-- | src/varcov.cpp | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/src/varcov.cpp b/src/varcov.cpp index 0f87ba8..39c3523 100644 --- a/src/varcov.cpp +++ b/src/varcov.cpp @@ -247,6 +247,7 @@ void Calc_Cor(vector<vector<double>> &X_mat, vector<double> &cov_vec) { // genotype file and calculate the covariance matrix for neighboring // SNPs output values at 10000-SNP-interval. void VARCOV::AnalyzeBimbam() { + debug_msg("entering"); igzstream infile(file_geno.c_str(), igzstream::in); if (!infile) { cout << "error reading genotype file:" << file_geno << endl; @@ -345,6 +346,7 @@ void VARCOV::AnalyzeBimbam() { } void VARCOV::AnalyzePlink() { + debug_msg("entering"); string file_bed = file_bfile + ".bed"; ifstream infile(file_bed.c_str(), ios::binary); if (!infile) { |