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| author | Peter Carbonetto | 2017-10-09 16:23:05 -0500 |
|---|---|---|
| committer | GitHub | 2017-10-09 16:23:05 -0500 |
| commit | ab2a1830659ac970d97c107f145105fb410eb219 (patch) | |
| tree | 14d3cab14fca4b68eb0916992344b8248a380a61 /src/param.h | |
| parent | 1e99b37e42edb7981b44f1409cc3e55a47057878 (diff) | |
| parent | 86323ccaf26ad0a3b706a67a0014dd04b9965823 (diff) | |
| download | pangemma-ab2a1830659ac970d97c107f145105fb410eb219.tar.gz | |
Merge pull request #92 from genenetwork/gemma-master
Fixed for a number of outstanding issues.
Diffstat (limited to 'src/param.h')
| -rw-r--r-- | src/param.h | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/src/param.h b/src/param.h index 08b1e10..ff279bd 100644 --- a/src/param.h +++ b/src/param.h @@ -56,6 +56,9 @@ public: double p_wald; // p value from a Wald test. double p_lrt; // p value from a likelihood ratio test. double p_score; // p value from a score test. + double logl_H1; // log likelihood under the alternative + // hypothesis as a measure of goodness of fit, + // see https://github.com/genetics-statistics/GEMMA/issues/81 }; // Results for mvLMM. @@ -118,7 +121,7 @@ public: bool mode_debug = false; uint issue; // enable tests for issue on github tracker - int a_mode; // Analysis mode, 1/2/3/4 for Frequentist tests + uint a_mode; // Analysis mode, 1/2/3/4 for Frequentist tests int k_mode; // Kinship read mode: 1: n by n matrix, 2: id/id/k_value; vector<size_t> p_column; // Which phenotype column needs analysis. size_t d_pace; // Display pace |