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| author | Pjotr Prins | 2017-10-06 08:41:17 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2017-10-06 08:41:17 +0000 |
| commit | 2add397847701d8f939eab55bacddb54fdb8c641 (patch) | |
| tree | f793f52557dd9ef071aae77a34ea5b000466caa5 /src/lmm.h | |
| parent | df161be507ac0ad1d67a6528ebc664acec89fc9c (diff) | |
| download | pangemma-2add397847701d8f939eab55bacddb54fdb8c641.tar.gz | |
LMM: lifted out file access
Diffstat (limited to 'src/lmm.h')
| -rw-r--r-- | src/lmm.h | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/src/lmm.h b/src/lmm.h index 72ce523..bd303b0 100644 --- a/src/lmm.h +++ b/src/lmm.h @@ -23,6 +23,7 @@ #include "gsl/gsl_vector.h" #include "io.h" #include "param.h" +#include <functional> using namespace std; @@ -89,13 +90,18 @@ public: void AnalyzeGene(const gsl_matrix *U, const gsl_vector *eval, const gsl_matrix *UtW, const gsl_vector *Utx, const gsl_matrix *W, const gsl_vector *x); - void AnalyzePlink(const gsl_matrix *U, const gsl_vector *eval, - const gsl_matrix *UtW, const gsl_vector *Uty, - const gsl_matrix *W, const gsl_vector *y); + void Analyze(std::function< string(void) >& fetch_line, + const gsl_matrix *U, const gsl_vector *eval, + const gsl_matrix *UtW, const gsl_vector *Uty, + const gsl_matrix *W, const gsl_vector *y, + const set<string> gwasnps); void AnalyzeBimbam(const gsl_matrix *U, const gsl_vector *eval, const gsl_matrix *UtW, const gsl_vector *Uty, const gsl_matrix *W, const gsl_vector *y, const set<string> gwasnps); + void AnalyzePlink(const gsl_matrix *U, const gsl_vector *eval, + const gsl_matrix *UtW, const gsl_vector *Uty, + const gsl_matrix *W, const gsl_vector *y); void AnalyzePlinkGXE(const gsl_matrix *U, const gsl_vector *eval, const gsl_matrix *UtW, const gsl_vector *Uty, const gsl_matrix *W, const gsl_vector *y, |