diff options
| author | Pjotr Prins | 2017-10-13 15:23:00 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2017-10-13 15:27:24 +0000 |
| commit | fdb48997ee3ed2b326a92f8e0cc7f72a4b38d8c8 (patch) | |
| tree | 5f62e06dbacdec2d4ee60da9112508615d42fc1f /src/io.h | |
| parent | 7eca3c49b7790007a4190b73209cab9ffb2bb117 (diff) | |
| download | pangemma-fdb48997ee3ed2b326a92f8e0cc7f72a4b38d8c8.tar.gz | |
Refactored debug settings
Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA
Diffstat (limited to 'src/io.h')
| -rw-r--r-- | src/io.h | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/src/io.h b/src/io.h index c65a2b0..215e8ba 100644 --- a/src/io.h +++ b/src/io.h @@ -64,7 +64,7 @@ bool ReadFile_geno(const string &file_geno, const set<string> &setSnps, const double &r2_level, map<string, string> &mapRS2chr, map<string, long int> &mapRS2bp, map<string, double> &mapRS2cM, vector<SNPINFO> &snpInfo, - size_t &ns_test, bool debug); + size_t &ns_test); bool ReadFile_bed(const string &file_bed, const set<string> &setSnps, const gsl_matrix *W, vector<int> &indicator_idv, vector<int> &indicator_snp, vector<SNPINFO> &snpInfo, @@ -94,7 +94,7 @@ bool PlinkKin(const string &file_bed, vector<int> &indicator_snp, bool ReadFile_geno(const string file_geno, vector<int> &indicator_idv, vector<int> &indicator_snp, gsl_matrix *UtX, gsl_matrix *K, - const bool calc_K, bool debug); + const bool calc_K); bool ReadFile_bed(const string &file_bed, vector<int> &indicator_idv, vector<int> &indicator_snp, gsl_matrix *UtX, gsl_matrix *K, const bool calc_K); @@ -102,7 +102,7 @@ bool ReadFile_geno(const string &file_geno, vector<int> &indicator_idv, vector<int> &indicator_snp, vector<vector<unsigned char>> &Xt, gsl_matrix *K, const bool calc_K, const size_t ni_test, - const size_t ns_test, bool debug); + const size_t ns_test); bool ReadFile_bed(const string &file_bed, vector<int> &indicator_idv, vector<int> &indicator_snp, vector<vector<unsigned char>> &Xt, gsl_matrix *K, const bool calc_K, const size_t ni_test, |