Adding support for checkpoints and relevant documentation

1 files changed, 3 insertions, 0 deletions

diff --git a/src/gemma_io.cpp b/src/gemma_io.cpp
index b11bf88..698d3e2 100644
--- a/src/gemma_io.cpp
+++ b/src/gemma_io.cpp
@@ -42,6 +42,7 @@
 #include "gsl/gsl_matrix.h"
 #include "gsl/gsl_vector.h"
 
+#include "checkpoint.h"
 #include "debug.h"
 // #include "eigenlib.h"
 #include "fastblas.h"
@@ -552,6 +553,7 @@ bool ReadFile_bim(const string &file_bim, vector<SNPINFO> &snpInfo) {
 
   infile.close();
   infile.clear();
+  checkpoint("read-bimbam-file",file_bim);
   return true;
 }
 
@@ -869,6 +871,7 @@ bool ReadFile_geno(const string &file_geno, const set<string> &setSnps,
   infile.close();
   infile.clear();
 
+  checkpoint("read-geno-file",file_geno);
   return true;
 }