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| author | Pjotr Prins | 2025-12-02 09:04:28 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2025-12-02 09:04:28 +0100 |
| commit | a1e252bfc7fc874fb4c442288b4b33e232d5002e (patch) | |
| tree | 240d7bd5910ee39f273221265b2064f7ec60fcd5 /src/gemma.cpp | |
| parent | db417c280c570dc153ec72b3874b11c23761f969 (diff) | |
| download | pangemma-a1e252bfc7fc874fb4c442288b4b33e232d5002e.tar.gz | |
Started generating output
Diffstat (limited to 'src/gemma.cpp')
| -rw-r--r-- | src/gemma.cpp | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/src/gemma.cpp b/src/gemma.cpp index 69e338a..c7f7ab6 100644 --- a/src/gemma.cpp +++ b/src/gemma.cpp @@ -2842,9 +2842,10 @@ void GEMMA::BatchRun(PARAM &cPar) { gsl_vector_view UtY_col = gsl_matrix_column(UtY, 0); // and its transformed write(&Y_col.vector, "Y_col"); - if (cPar.is_mdb) + if (cPar.is_mdb) { cLmm.mdb_calc_gwa(U, eval, UtW, &UtY_col.vector, W, &Y_col.vector, cPar.setGWASnps); + } else if (!cPar.file_bfile.empty()) { // PLINK analysis |