version 0.95alpha

1 files changed, 0 insertions, 86 deletions

diff --git a/main.cpp b/main.cpp
deleted file mode 100644
index e1fb336..0000000
--- a/main.cpp
+++ /dev/null
@@ -1,86 +0,0 @@
-/*
-	Genome-wide Efficient Mixed Model Association (GEMMA)
-    Copyright (C) 2011  Xiang Zhou
-
-    This program is free software: you can redistribute it and/or modify
-    it under the terms of the GNU General Public License as published by
-    the Free Software Foundation, either version 3 of the License, or
-    (at your option) any later version.
-
-    This program is distributed in the hope that it will be useful,
-    but WITHOUT ANY WARRANTY; without even the implied warranty of
-    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-    GNU General Public License for more details.
-
-    You should have received a copy of the GNU General Public License
-    along with this program.  If not, see <http://www.gnu.org/licenses/>.
-*/
-
-#include <iostream>
-#include <fstream>
-#include <sstream>
-#include <sys/stat.h>
-#include <sys/types.h>
-
-#include "param.h"
-
-#ifdef FORCE_FLOAT
-#include "gemma_float.h"
-#else
-#include "gemma.h"
-#endif
-
-using namespace std;
-
-
-
-int main(int argc, char * argv[])
-{ 	
-	GEMMA cGemma;	
-	PARAM cPar;
-
-	if (argc <= 1) {
-		cGemma.PrintHeader(); 
-		return EXIT_SUCCESS;
-	}
-	if (argc==2 && argv[1][0] == '-' && argv[1][1] == 'h') {
-		cGemma.PrintHelp(0);
-		return EXIT_SUCCESS;
-	}
-	if (argc==3 && argv[1][0] == '-' && argv[1][1] == 'h') {
-		string str;
-		str.assign(argv[2]);
-		cGemma.PrintHelp(atoi(str.c_str()));
-		return EXIT_SUCCESS;
-	}
-	if (argc==2 && argv[1][0] == '-' && argv[1][1] == 'l') {
-		cGemma.PrintLicense();
-		return EXIT_SUCCESS;
-	}	
-	
-	cGemma.Assign(argc, argv, cPar); 
-
-	ifstream check_dir((cPar.path_out).c_str());
-	if (!check_dir) {
-	  mkdir((cPar.path_out).c_str(), S_IRWXU|S_IRGRP|S_IROTH);
-	}	
-		
-	if (cPar.error==true) {return EXIT_FAILURE;}
-	     
-	if (cPar.mode_silence) {stringstream ss; cout.rdbuf (ss.rdbuf());}
-	
-	cPar.CheckParam();
-	
-	if (cPar.error==true) {return EXIT_FAILURE;}
-	
-	cGemma.BatchRun(cPar);
-	
-	if (cPar.error==true) {return EXIT_FAILURE;}
-	
-	cGemma.WriteLog(argc, argv, cPar);
-	
-    return EXIT_SUCCESS;                                                          
-}
-
-
-