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authorPjotr Prins2018-05-02 11:23:45 +0000
committerPjotr Prins2018-05-02 11:23:45 +0000
commitcee92876e456299e14afd51e0b719384c48c5286 (patch)
treef96b864fa3668618408a559e86c7030257279e78 /README.md
parent135c977cf25a688846c0f8180720c7880a90a7dd (diff)
downloadpangemma-cee92876e456299e14afd51e0b719384c48c5286.tar.gz
doc: data-munging
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@@ -159,6 +159,16 @@ hardware. See [INSTALL.md](INSTALL.md) for speeding up tips.
More information on source code, dependencies and installation can be
found in [INSTALL.md](INSTALL.md).
+## Input data formats
+
+Currently GEMMA takes two types of input formats
+
+1. BIMBAM format (preferred)
+2. PLINK format
+
+See this [example](./doc/example/data-munging.org) where we convert some
+spreadsheets for use in GEMMA.
+
## Reporting a GEMMA bug or issue
For bugs GEMMA has an
@@ -170,10 +180,11 @@ Before posting an issue search the issue tracker and mailing list
first. It is likely someone may have encountered something
similiar. Also try running the latest version of GEMMA to make sure it
has not been fixed already. Support/installation questions should be
-aimed at the mailing list. The issue tracker is for development issues
-around the software itself. When reporting an issue include the output
-of the program and the contents of the .log.txt file in the output
-directory.
+aimed at the mailing list - it is the best resource to get answers.
+
+The issue tracker is specifically meant for development issues around
+the software itself. When reporting an issue include the output of the
+program and the contents of the .log.txt file in the output directory.
### Check list: