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authorPjotr Prins2021-08-16 10:56:02 +0200
committerPjotr Prins2021-08-16 10:56:02 +0200
commit0dbe0670fe437ddadd713f8abc404a4be215ac7f (patch)
tree75d425d21560fa8580b2c4ec0331feca9e3a5351 /README.md
parent42de3667c90964206c3764be1867527d8eeb8cfc (diff)
downloadpangemma-0dbe0670fe437ddadd713f8abc404a4be215ac7f.tar.gz
README.md
README
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@@ -116,15 +116,15 @@ a typical example would be
```sh
# compute Kinship matrix
-gemma -g ../example/mouse_hs1940.geno.txt.gz -p ../example/mouse_hs1940.pheno.txt \
+gemma -g ./example/mouse_hs1940.geno.txt.gz -p ./example/mouse_hs1940.pheno.txt \
-gk -o mouse_hs1940
# run univariate LMM
-gemma -g ../example/mouse_hs1940.geno.txt.gz \
- -p ../example/mouse_hs1940.pheno.txt -n 1 -a ../example/mouse_hs1940.anno.txt \
+gemma -g ./example/mouse_hs1940.geno.txt.gz \
+ -p ./example/mouse_hs1940.pheno.txt -n 1 -a ./example/mouse_hs1940.anno.txt \
-k ./output/mouse_hs1940.cXX.txt -lmm -o mouse_hs1940_CD8_lmm
```
-Above example files can be downloaded from
+Above example files are in the git repo and can be downloaded from
[github](https://github.com/genetics-statistics/GEMMA/tree/master/example).
### Debugging and optimization