diff options
| author | Pjotr Prins | 2017-08-14 07:43:07 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2017-08-14 08:23:14 +0000 |
| commit | ff1252fe3db1ba639fe148f45b0408a4f182da0d (patch) | |
| tree | e11ee6858159b53b2570273f9ba3d1ac882232f7 /Makefile | |
| parent | 3763f477e17a74942e1bf545aa9493d39bf9448e (diff) | |
| download | pangemma-ff1252fe3db1ba639fe148f45b0408a4f182da0d.tar.gz | |
Tests and fixes https://github.com/genetics-statistics/GEMMA/issues/26
Diffstat (limited to 'Makefile')
| -rw-r--r-- | Makefile | 22 |
1 files changed, 12 insertions, 10 deletions
@@ -16,7 +16,9 @@ WITH_OPENBLAS = NO_INTEL_COMPAT = FORCE_32BIT = FORCE_DYNAMIC = +GCC_FLAGS = -O3 # extra flags -Wl,--allow-multiple-definition DIST_NAME = gemma-0.97.1 +TRAVIS_CI = # -------------------------------------------------------------------- # Edit below this line with caution @@ -36,11 +38,10 @@ else endif ifdef DEBUG - # development mode - CPPFLAGS = -g -O3 -std=gnu++11 -isystem/$(EIGEN_INCLUDE_PATH) + CPPFLAGS = -g $(GCC_FLAGS) -std=gnu++11 -isystem/$(EIGEN_INCLUDE_PATH) else - # release - CPPFLAGS = -DNDEBUG -O3 -std=gnu++11 -isystem/$(EIGEN_INCLUDE_PATH) + # release mode + CPPFLAGS = -DNDEBUG $(GCC_FLAGS) -std=gnu++11 -isystem/$(EIGEN_INCLUDE_PATH) endif ifdef SHOW_COMPILER_WARNINGS @@ -50,7 +51,9 @@ endif ifdef FORCE_DYNAMIC LIBS = -lgsl -lgslcblas -pthread -lz else - LIBS = -lgsl -lgslcblas -pthread -lz + ifndef TRAVIS_CI # Travis static compile we cheat a little + CPPFLAGS += -static + endif endif OUTPUT = $(BIN_DIR)/gemma @@ -65,8 +68,10 @@ LIBS_LNX_D_LAPACK = -llapack LIBS_LNX_D_BLAS = -lblas LIBS_LNX_D_OPENBLAS = -lopenblas LIBS_MAC_D_LAPACK = -framework Veclib +# LIBS_LNX_S_LAPACK = /usr/lib/libgsl.a /usr/lib/libgslcblas.a /usr/lib/lapack/liblapack.a -lz LIBS_LNX_S_LAPACK = /usr/lib/lapack/liblapack.a -lgfortran /usr/lib/atlas-base/libatlas.a /usr/lib/libblas/libblas.a -Wl,--allow-multiple-definition + SOURCES += $(SRC_DIR)/param.cpp $(SRC_DIR)/gemma.cpp $(SRC_DIR)/io.cpp $(SRC_DIR)/lm.cpp $(SRC_DIR)/lmm.cpp $(SRC_DIR)/vc.cpp $(SRC_DIR)/mvlmm.cpp $(SRC_DIR)/bslmm.cpp $(SRC_DIR)/prdt.cpp $(SRC_DIR)/mathfunc.cpp $(SRC_DIR)/gzstream.cpp $(SRC_DIR)/eigenlib.cpp $(SRC_DIR)/ldr.cpp $(SRC_DIR)/bslmmdap.cpp $(SRC_DIR)/logistic.cpp $(SRC_DIR)/varcov.cpp HDR += $(SRC_DIR)/param.h $(SRC_DIR)/gemma.h $(SRC_DIR)/io.h $(SRC_DIR)/lm.h $(SRC_DIR)/lmm.h $(SRC_DIR)/vc.h $(SRC_DIR)/mvlmm.h $(SRC_DIR)/bslmm.h $(SRC_DIR)/prdt.h $(SRC_DIR)/mathfunc.h $(SRC_DIR)/gzstream.h $(SRC_DIR)/eigenlib.h @@ -82,6 +87,8 @@ else LIBS += $(LIBS_LNX_D_BLAS) endif LIBS += $(LIBS_LNX_D_LAPACK) + else + LIBS += $(LIBS_LNX_S_LAPACK) endif endif SOURCES += $(SRC_DIR)/lapack.cpp @@ -97,11 +104,6 @@ ifdef NO_INTEL_COMPAT endif endif -ifdef FORCE_DYNAMIC -else - CPPFLAGS += -static -endif - # all OBJS = $(SOURCES:.cpp=.o) |