Removing older makefiles - note that the docker image works on macosx.

1 files changed, 0 insertions, 153 deletions

diff --git a/Makefile.macosx b/Makefile.macosx
deleted file mode 100644
index fa7460e..0000000
--- a/Makefile.macosx
+++ /dev/null
@@ -1,153 +0,0 @@
-# Generic Makefile for GEMMA
-#
-# Supported platforms
-#
-#       Unix / Linux               	LNX (default)
-#       Mac                        	MAC
-#
-# Compilation options
-#       static compilation    		FORCE_STATIC
-#
-# Examples:
-#
-#    Make GEMMA on Linux with OPENBLAS support:
-#
-#      make WITH_OPENBLAS=1
-#
-#    Disable debug info and checks (slightly faster release mode)
-#
-#      make WITH_OPENBLAS=1 DEBUG=
-#
-#    Force static compilation
-#
-#      make FORCE_STATIC=1
-#
-#    Run tests with
-#
-#      make check
-#
-#    See also the INSTALL.md document in the source tree at
-#
-#      https://github.com/genetics-statistics/GEMMA/blob/master/INSTALL.md
-
-GEMMA_VERSION = $(shell cat ./VERSION)
-
-# Set this variable to either LNX or MAC
-SYS                    = MAC # LNX|MAC (Linux is the default)
-# Leave blank after "=" to disable; put "= 1" to enable
-DIST_NAME              = gemma-$(GEMMA_VERSION)
-DEBUG                  =     # DEBUG mode, set DEBUG= for a release
-SHOW_COMPILER_WARNINGS =
-WITH_LAPACK            = 1
-WITH_OPENBLAS          =     # Defaults to LAPACK - OPENBLAS may be faster
-FORCE_STATIC           =     # Static linking of libraries
-GCC_FLAGS              = -O3 -I/usr/local/Cellar/gsl/2.4/include -I./eigen \
-                         -I/System/Library/Frameworks/Accelerate.framework/Versions/Current/Frameworks/vecLib.framework/Headers
-TRAVIS_CI              =     # used by TRAVIS for testing
-EIGEN_INCLUDE_PATH=
-CXX = g++
-
-# --------------------------------------------------------------------
-# Edit below this line with caution
-# --------------------------------------------------------------------
-
-BIN_DIR  = ./bin
-SRC_DIR  = ./src
-TEST_SRC_DIR  = ./test/src
-
-ifdef CXX # CXX defined in environment
-  CPP = $(CXX)
-  CC = $(CXX)
-else
-  CPP = g++
-endif
-
-ifdef OPENBLAS
-  WITH_LAPACK =  # OPENBLAS usually includes LAPACK
-endif
-
-ifdef DEBUG
-  CPPFLAGS = -g $(GCC_FLAGS) -std=gnu++11 -isystem/$(EIGEN_INCLUDE_PATH) -Icontrib/catch-1.9.7 -Isrc
-else
-  # release mode
-  CPPFLAGS = -DNDEBUG $(GCC_FLAGS) -std=gnu++11 -isystem/$(EIGEN_INCLUDE_PATH) -Icontrib/catch-1.9.7 -Isrc
-endif
-
-ifdef SHOW_COMPILER_WARNINGS
-  CPPFLAGS += -Wall
-endif
-
-OUTPUT = $(BIN_DIR)/gemma
-
-SOURCES = $(SRC_DIR)/main.cpp
-
-HDR =
-
-# Detailed libary paths, D for dynamic and S for static
-LIBS += -framework Accelerate \
-  /usr/local/opt/zlib/lib/libz.a \
-  /usr/local/Cellar/gsl/2.4/lib/libgsl.a \
-  /usr/local/Cellar/gsl/2.4/lib/libgslcblas.a
-
-HDR          = $(wildcard src/*.h) ./src/version.h
-SOURCES      = $(wildcard src/*.cpp)
-
-# all
-OBJS = $(SOURCES:.cpp=.o)
-
-all: $(OUTPUT)
-
-./src/version.h:
-	./scripts/gen_version_info.sh > src/version.h
-
-<print-% : ; @echo $* = $($*)
-
-$(OUTPUT): $(OBJS)
-	$(CPP) $(CPPFLAGS) $(OBJS) $(LIBS) -o $(OUTPUT)
-
-$(OBJS)  : $(HDR)
-
-.cpp.o:
-	$(CPP) $(CPPFLAGS) $(HEADERS) -c $*.cpp -o $*.o
-.SUFFIXES : .cpp .c .o $(SUFFIXES)
-
-unittests: all contrib/catch-1.9.7/catch.hpp $(TEST_SRC_DIR)/unittests-main.o $(TEST_SRC_DIR)/unittests-math.o
-	$(CPP) $(CPPFLAGS) $(TEST_SRC_DIR)/unittests-main.o  $(TEST_SRC_DIR)/unittests-math.o $(filter-out src/main.o, $(OBJS)) $(LIBS) -o ./bin/unittests-gemma
-	./bin/unittests-gemma
-
-fast-check: all unittests
-	rm -vf test/output/*
-	cd test && ./dev_test_suite.sh | tee ../dev_test.log
-	grep -q 'success rate: 100%' dev_test.log
-
-slow-check: all
-	rm -vf test/output/*
-	cd test && ./test_suite.sh | tee ../test.log
-	grep -q 'success rate: 100%' test.log
-
-lengthy-check: all
-	rm -vf test/output/*
-	cd test && ./lengthy_test_suite.sh | tee ../lengthy_test.log
-	grep -q 'success rate: 100%' lengthy_test.log
-
-check: fast-check slow-check
-
-check-all: check lengthy-check
-
-clean:
-	rm -vf $(SRC_DIR)/version.h
-	rm -vf $(SRC_DIR)/*.o
-	rm -vf $(SRC_DIR)/*~
-	rm -vf $(TEST_SRC_DIR)/*.o
-	rm -vf $(OUTPUT)
-	rm -vf ./bin/unittests-gemma
-
-DIST_COMMON = COPYING.txt README.txt Makefile
-DIST_SUBDIRS = src doc example bin
-
-tar:
-	mkdir -p ./$(DIST_NAME)
-	cp $(DIST_COMMON) ./$(DIST_NAME)/
-	cp -r $(DIST_SUBDIRS) ./$(DIST_NAME)/
-	tar cvzf $(DIST_NAME).tar.gz ./$(DIST_NAME)/
-	rm -r ./$(DIST_NAME)