Removing older makefiles - note that the docker image works on macosx.

1 files changed, 0 insertions, 110 deletions

diff --git a/Makefile.linux b/Makefile.linux
deleted file mode 100644
index ab6163d..0000000
--- a/Makefile.linux
+++ /dev/null
@@ -1,110 +0,0 @@
-#Makefile
-
-# Supported platforms
-#       Unix / Linux               	LNX
-#       Mac                        	MAC
-# Compilation options
-#       link to LAPACK              WITH_LAPACK
-#       32-bit binary        		FORCE_32BIT
-#       dynamic compilation    		FORCE_DYNAMIC
-
-# Set this variable to either LNX or MAC
-SYS = LNX
-# Leave blank after "=" to disable; put "= 1" to enable
-# Disable WITH_LAPACK option can slow computation speed significantly and is not recommended
-# Disable WITH_ARPACK option only disable -apprx option in the software
-WITH_LAPACK = 1
-FORCE_32BIT =
-FORCE_DYNAMIC =
-DIST_NAME = gemma-0.97.1
-
-# --------------------------------------------------------------------
-# Edit below this line with caution
-# --------------------------------------------------------------------
-
-BIN_DIR  = ./bin
-
-SRC_DIR  = ./src
-
-CPP = g++
-
-CPPFLAGS = -O3 -std=gnu++11 -I./eigen
-
-LIBS = /software/gsl-1.16-el7-x86_64/lib/libgslcblas.a \
-       /software/gsl-1.16-el7-x86_64/lib/libgsl.a \
-       -pthread -lz
-
-# ifdef FORCE_DYNAMIC
-# LIBS = -lgsl -lgslcblas -lblas -pthread -lz
-# else
-# LIBS = -lgsl -lgslcblas -pthread -lz
-# endif
-
-OUTPUT = $(BIN_DIR)/gemma
-
-SOURCES = $(SRC_DIR)/main.cpp
-
-HDR =
-
-# Detailed libary paths, D for dynamic and S for static
-LIBS_LNX_D_LAPACK = -llapack
-LIBS_MAC_D_LAPACK = -framework Veclib
-LIBS_LNX_S_LAPACK = /software/atlas-3.10.3-el7-x86_64/lib/liblapack.a \
-   /software/atlas-3.10.3-el7-x86_64/lib/libcblas.a \
-   /software/atlas-3.10.3-el7-x86_64/lib/libf77blas.a \
-   /software/atlas-3.10.3-el7-x86_64/lib/libatlas.a -lgfortran \
-   -Wl,--allow-multiple-definition
-
-SOURCES += $(SRC_DIR)/param.cpp $(SRC_DIR)/gemma.cpp $(SRC_DIR)/io.cpp $(SRC_DIR)/lm.cpp $(SRC_DIR)/lmm.cpp $(SRC_DIR)/vc.cpp $(SRC_DIR)/mvlmm.cpp $(SRC_DIR)/bslmm.cpp $(SRC_DIR)/prdt.cpp $(SRC_DIR)/mathfunc.cpp $(SRC_DIR)/gzstream.cpp $(SRC_DIR)/eigenlib.cpp $(SRC_DIR)/ldr.cpp $(SRC_DIR)/bslmmdap.cpp $(SRC_DIR)/logistic.cpp $(SRC_DIR)/varcov.cpp
-HDR += $(SRC_DIR)/param.h $(SRC_DIR)/gemma.h $(SRC_DIR)/io.h $(SRC_DIR)/lm.h $(SRC_DIR)/lmm.h $(SRC_DIR)/vc.h $(SRC_DIR)/mvlmm.h $(SRC_DIR)/bslmm.h $(SRC_DIR)/prdt.h $(SRC_DIR)/mathfunc.h $(SRC_DIR)/gzstream.h $(SRC_DIR)/eigenlib.h
-
-ifdef WITH_LAPACK
-  OBJS += $(SRC_DIR)/lapack.o
-  CPPFLAGS += -DWITH_LAPACK
-ifeq ($(SYS), MAC)
-  LIBS += $(LIBS_MAC_D_LAPACK)
-else
-ifdef FORCE_DYNAMIC
-  LIBS += $(LIBS_LNX_D_LAPACK)
-else
-  LIBS += $(LIBS_LNX_S_LAPACK)
-endif
-endif
-  SOURCES += $(SRC_DIR)/lapack.cpp
-  HDR += $(SRC_DIR)/lapack.h
-endif
-
-ifdef FORCE_32BIT
-  CPPFLAGS += -m32
-else
-  CPPFLAGS += -m64
-endif
-
-# all
-OBJS = $(SOURCES:.cpp=.o)
-
-all: $(OUTPUT)
-
-$(OUTPUT): $(OBJS)
-	$(CPP) $(CPPFLAGS) $(OBJS) $(LIBS) -o $(OUTPUT)
-
-$(OBJS) : $(HDR)
-
-.cpp.o:
-	$(CPP) $(CPPFLAGS) $(HEADERS) -c $*.cpp -o $*.o
-.SUFFIXES : .cpp .c .o $(SUFFIXES)
-
-
-clean:
-	rm -rf ${SRC_DIR}/*.o ${SRC_DIR}/*~ *~ $(OUTPUT)
-
-DIST_COMMON = COPYING.txt README.txt Makefile
-DIST_SUBDIRS = src doc example bin
-
-tar:
-	mkdir -p ./$(DIST_NAME)
-	cp $(DIST_COMMON) ./$(DIST_NAME)/
-	cp -r $(DIST_SUBDIRS) ./$(DIST_NAME)/
-	tar cvzf $(DIST_NAME).tar.gz ./$(DIST_NAME)/
-	rm -r ./$(DIST_NAME)
-