diff options
| author | Peter Carbonetto | 2017-08-14 21:50:00 -0500 |
|---|---|---|
| committer | GitHub | 2017-08-14 21:50:00 -0500 |
| commit | a6eca6837cf1eedb3a660dd434b05389c3ec4e95 (patch) | |
| tree | e11ee6858159b53b2570273f9ba3d1ac882232f7 /INSTALL.md | |
| parent | 3763f477e17a74942e1bf545aa9493d39bf9448e (diff) | |
| parent | ff1252fe3db1ba639fe148f45b0408a4f182da0d (diff) | |
| download | pangemma-a6eca6837cf1eedb3a660dd434b05389c3ec4e95.tar.gz | |
Merge pull request #68 from genenetwork/issue26.
Tests and fixes https://github.com/genetics-statistics/GEMMA/issues/26.
Diffstat (limited to 'INSTALL.md')
| -rw-r--r-- | INSTALL.md | 6 |
1 files changed, 5 insertions, 1 deletions
@@ -14,7 +14,7 @@ GEMMA runs on Linux and MAC OSX and the runtime has the following dependencies: * C++ tool chain >= 4.9 -* GNU Science library (GSL) 1.x (does not currently work with GSL >= 2). +* GNU Science library (GSL) 1.x (GEMMA does not currently work with GSL >= 2). * blas/openblas * lapack * [Eigen3 library](http://eigen.tuxfamily.org/dox/) @@ -67,6 +67,10 @@ work make EIGEN_INCLUDE_PATH=~/.guix-profile/include/eigen3 FORCE_DYNAMIC=1 WITH_OPENBLAS=1 DEBUG=1 +another example overriding optimization and LIB flags (so as to link against gslv1) would be + + make EIGEN_INCLUDE_PATH=~/.guix-profile/include/eigen3 WITH_OPENBLAS=1 DEBUG=1 FORCE_DYNAMIC=1 GCC_FLAGS="-O3" LIBS="$HOME/opt/gsl1/lib/libgsl.a $HOME/opt/gsl1/lib/libgslcblas.a -L$HOME/.guix-profile/lib -pthread -llapack -lblas -lz" + to run GEMMA tests time make check |