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| author | Peter Carbonetto | 2017-07-07 09:51:31 -0500 |
|---|---|---|
| committer | Peter Carbonetto | 2017-07-07 09:51:31 -0500 |
| commit | c825a61e4de321d972b67d08733ad6f337828e5e (patch) | |
| tree | a3afb3d437d9546cab80edb7a7cb979bbe97b4de | |
| parent | ff19b2bd8f3f5c708c3156e9adf26fa94b4d4ea1 (diff) | |
| parent | 5bf851bb38244c8a5bba206f0748e2df0b8f1950 (diff) | |
| download | pangemma-c825a61e4de321d972b67d08733ad6f337828e5e.tar.gz | |
Merge branch 'master' of github.com:xiangzhou/GEMMA
| -rw-r--r-- | Makefile | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/Makefile b/Makefile index 712b1ad..e546fce 100644 --- a/Makefile +++ b/Makefile @@ -11,15 +11,16 @@ SYS = LNX # Leave blank after "=" to disable; put "= 1" to enable WITH_LAPACK = 1 -NO_INTEL_COMPAT = -FORCE_32BIT = -FORCE_DYNAMIC = +NO_INTEL_COMPAT = +FORCE_32BIT = +FORCE_DYNAMIC = DIST_NAME = gemma-0.96 # -------------------------------------------------------------------- # Edit below this line with caution # -------------------------------------------------------------------- +EIGEN_INCLUDE_PATH=/usr/include/eigen3 BIN_DIR = ./bin @@ -27,7 +28,7 @@ SRC_DIR = ./src CPP = g++ -CPPFLAGS = -Wall -Weffc++ -O3 -std=gnu++11 +CPPFLAGS = -Wall -Weffc++ -O3 -std=gnu++11 -I$(EIGEN_INCLUDE_PATH) ifdef FORCE_DYNAMIC LIBS = -lgsl -lgslcblas -lblas -pthread -lz @@ -39,13 +40,13 @@ OUTPUT = $(BIN_DIR)/gemma SOURCES = $(SRC_DIR)/main.cpp -HDR = +HDR = # Detailed libary paths, D for dynamic and S for static LIBS_LNX_D_LAPACK = -llapack LIBS_MAC_D_LAPACK = -framework Veclib -LIBS_LNX_S_LAPACK = /usr/lib/lapack/liblapack.a -lgfortran /usr/lib/atlas-base/libatlas.a /usr/lib/libblas/libblas.a -Wl,--allow-multiple-definition +LIBS_LNX_S_LAPACK = /usr/lib/lapack/liblapack.a -lgfortran /usr/lib/atlas-base/libatlas.a /usr/lib/libblas/libblas.a -Wl,--allow-multiple-definition SOURCES += $(SRC_DIR)/param.cpp $(SRC_DIR)/gemma.cpp $(SRC_DIR)/io.cpp $(SRC_DIR)/lm.cpp $(SRC_DIR)/lmm.cpp $(SRC_DIR)/vc.cpp $(SRC_DIR)/mvlmm.cpp $(SRC_DIR)/bslmm.cpp $(SRC_DIR)/prdt.cpp $(SRC_DIR)/mathfunc.cpp $(SRC_DIR)/gzstream.cpp $(SRC_DIR)/eigenlib.cpp $(SRC_DIR)/ldr.cpp $(SRC_DIR)/bslmmdap.cpp $(SRC_DIR)/logistic.cpp $(SRC_DIR)/varcov.cpp HDR += $(SRC_DIR)/param.h $(SRC_DIR)/gemma.h $(SRC_DIR)/io.h $(SRC_DIR)/lm.h $(SRC_DIR)/lmm.h $(SRC_DIR)/vc.h $(SRC_DIR)/mvlmm.h $(SRC_DIR)/bslmm.h $(SRC_DIR)/prdt.h $(SRC_DIR)/mathfunc.h $(SRC_DIR)/gzstream.h $(SRC_DIR)/eigenlib.h @@ -90,7 +91,7 @@ $(OUTPUT): $(OBJS) $(OBJS) : $(HDR) -.cpp.o: +.cpp.o: $(CPP) $(CPPFLAGS) $(HEADERS) -c $*.cpp -o $*.o .SUFFIXES : .cpp .c .o $(SUFFIXES) @@ -107,4 +108,3 @@ tar: cp -r $(DIST_SUBDIRS) ./$(DIST_NAME)/ tar cvzf $(DIST_NAME).tar.gz ./$(DIST_NAME)/ rm -r ./$(DIST_NAME) - |