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authorPjotr Prins2017-12-07 12:03:09 +0000
committerPjotr Prins2017-12-07 12:03:09 +0000
commita398947aa3734738a27fc7b2811ef72fbcbfcd90 (patch)
treec1a9eed4e3613df67643ff2efb2214d5dd8c6eef
parentb1fdf72b0723982a1305a2439f0151ceaf2c1176 (diff)
downloadpangemma-a398947aa3734738a27fc7b2811ef72fbcbfcd90.tar.gz
Travis: fixes
-rw-r--r--.travis.yml2
-rw-r--r--src/mathfunc.cpp8
-rw-r--r--src/mvlmm.cpp1
3 files changed, 8 insertions, 3 deletions
diff --git a/.travis.yml b/.travis.yml
index 2d2cbc6..b5fc7cd 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -41,7 +41,7 @@ script:
- eval "${MATRIX_EVAL}"
- $CXX --version
# build and test debug version
- - make CXX=$CXX EIGEN_INCLUDE_PATH=$EIGEN_INCLUDE_PATH WITH_OPENBLAS=1 OPENBLAS_LEGACY=1 -j 4
+ - make CXX=$CXX EIGEN_INCLUDE_PATH=$EIGEN_INCLUDE_PATH WITH_OPENBLAS=1 OPENBLAS_LEGACY=1 -j 4 -k
- time make CXX=$CXX WITH_OPENBLAS=1 EIGEN_INCLUDE_PATH=$EIGEN_INCLUDE_PATH WITH_OPENBLAS=1 OPENBLAS_LEGACY=1 check
# - make clean
# build and test release version (integration test mostly)
diff --git a/src/mathfunc.cpp b/src/mathfunc.cpp
index 644b3e8..2cce43f 100644
--- a/src/mathfunc.cpp
+++ b/src/mathfunc.cpp
@@ -264,8 +264,12 @@ bool isMatrixPositiveDefinite(const gsl_matrix *G) {
auto s = gsl_linalg_cholesky_decomp(G2);
#endif
gsl_set_error_handler(handler);
- gsl_matrix_safe_free(G2);
- return (s == GSL_SUCCESS);
+ if (s == GSL_SUCCESS) {
+ gsl_matrix_safe_free(G2);
+ return true;
+ }
+ gsl_matrix_free(G2);
+ return (false);
}
gsl_vector *getEigenValues(const gsl_matrix *G) {
diff --git a/src/mvlmm.cpp b/src/mvlmm.cpp
index 95a59d7..eee562d 100644
--- a/src/mvlmm.cpp
+++ b/src/mvlmm.cpp
@@ -29,6 +29,7 @@
#include <stdio.h>
#include <stdlib.h>
+#include "gsl/gsl_blas.h"
#include "gsl/gsl_cdf.h"
#include "gsl/gsl_linalg.h"
#include "gsl/gsl_matrix.h"