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author | Pjotr Prins | 2020-11-29 08:49:43 +0000 |
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committer | Pjotr Prins | 2020-11-29 09:52:31 +0000 |
commit | 97916ac7b238f574040661d5b65dd39fccf12bfd (patch) | |
tree | 4a8682d76c31387ca1f98511614ad3b33e569c5d | |
parent | db5a05633a8316d143b822c070d77e92759b27a4 (diff) | |
download | pangemma-97916ac7b238f574040661d5b65dd39fccf12bfd.tar.gz |
README and RELEASE-NOTES
-rw-r--r-- | README.md | 19 | ||||
-rw-r--r-- | RELEASE-NOTES.md | 9 |
2 files changed, 19 insertions, 9 deletions
@@ -9,22 +9,23 @@ GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related models to genome-wide association studies (GWAS) and other large-scale data sets. -Check out [NEWS.md](NEWS.md) to see what's new in each GEMMA release. +Check out [RELEASE-NOTES.md](RELEASE-NOTES.md) to see what's new in +each GEMMA release. -Please post feature requests or suspected bugs to +Please post suspected bugs to [Github issues](https://github.com/genetics-statistics/GEMMA/issues). For questions or other discussion, please post to the [GEMMA Google Group](https://groups.google.com/group/gemma-discussion). We also encourage contributions, for example, by forking the repository, making your changes to the code, and issuing a pull request. -Currently, GEMMA is supported for 64-bit Mac OS X and Linux -platforms. *Windows is not currently supported.* though you can -run GEMMA in a Linux VM or [container](https://docs.docker.com/docker-for-windows/). If you are interested -in helping to make GEMMA available on Windows platforms (e.g., by -providing installation instructions for Windows, or by contributing -Windows binaries) please post a note in the -[Github issues](https://github.com/genetics-statistics/GEMMA/issues). +Currently, GEMMA provides a runnable Docker container for 64-bit +MacOS, Windows and Linux platforms. GEMMA can be installed with +Debian, Conda, Homebrew and GNU Guix. With Guix you find the latest +version +[here](http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics) +as it is the version we use every day on http://genenetwork.org. For +installation instructions see also [INSTALL.md](INSTALL.md). *(The above image depicts physiological and behavioral trait loci identified in CFW mice using GEMMA, from [Parker et al, Nature diff --git a/RELEASE-NOTES.md b/RELEASE-NOTES.md index 36243c1..7fa72cf 100644 --- a/RELEASE-NOTES.md +++ b/RELEASE-NOTES.md @@ -21,6 +21,15 @@ Maintenance release [docs](https://www.gnu.org/software/gsl/doc/html/rng.html). * The tests now use a fixed seed for the randomizer +A docker binary that runs on Linux, MaxOS and Windows can be downloaded from + +http://ipfs.genenetwork.org/ipfs/Qmaq1q73ox53ykKdRF6tYDXL9bEKJQfnGCqBxFdo1fcYPb/gemma-0.98.3-AMD64-Guix-docker-release.tgz + +After loading the image into Docker, run with something like + + docker run -w /run -v ${PWD}:/run ed5bf7499691 gemma -gk -bfile example/mouse_hs1940 + + ## ChangeLog v0.98.2 (2019/05/28) GCC 10.1 fix release |