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authorPjotr Prins2017-07-21 08:34:18 +0000
committerPjotr Prins2017-07-26 07:46:29 +0000
commit978d7a92911828b82452118273989b5a9a3d02d9 (patch)
tree5b7ce65ddce5fd5bd3eda1cf4b65841305243aa0
parent55dfeebd37aad6ae20a4cc3502507e2ba420a397 (diff)
downloadpangemma-978d7a92911828b82452118273989b5a9a3d02d9.tar.gz
github: fix links to gemma repo
-rw-r--r--INSTALL.md2
-rw-r--r--README.md6
-rwxr-xr-xtest/test_suite.sh2
3 files changed, 5 insertions, 5 deletions
diff --git a/INSTALL.md b/INSTALL.md
index e4da6ff..05b0eb8 100644
--- a/INSTALL.md
+++ b/INSTALL.md
@@ -23,7 +23,7 @@ dependencies:
### Bioconda
-(Note Bioconda install is a work in [progress](https://github.com/xiangzhou/GEMMA/issues/52)
+(Note Bioconda install is a work in [progress](https://github.com/genetics-statistics/GEMMA/issues/52)
Recent versions of GEMMA can be installed with
[BioConda](http://ddocent.com/bioconda/) without root permissions using the following
diff --git a/README.md b/README.md
index e196681..a614d0b 100644
--- a/README.md
+++ b/README.md
@@ -10,7 +10,7 @@ models (LMMs) and related models to genome-wide association studies
Check out [NEWS.md](NEWS.md) to see what's new in each GEMMA release.
Please post comments, feature requests or suspected bugs to
-[Github issues](https://github.com/xiangzhou/GEMMA/issues). We also
+[Github issues](https://github.com/genetics-statistics/GEMMA/issues). We also
encourage contributions, for example, by forking the repository,
making your changes to the code, and issuing a pull request.
@@ -19,7 +19,7 @@ platforms. *Windows is not currently supported.* If you are interested
in helping to make GEMMA available on Windows platforms (e.g., by
providing installation instructions for Windows, or by contributing
Windows binaries) please post a note in the
-[Github issues](https://github.com/xiangzhou/GEMMA/issues).
+[Github issues](https://github.com/genetics-statistics/GEMMA/issues).
*(The above image depicts physiological and behavioral trait
loci identified in CFW mice using GEMMA, from [Parker et al, Nature
@@ -199,4 +199,4 @@ University of Michigan<br>
Peter Carbonetto, Tim Flutre, Matthew Stephens, Pjotr Prins and others
have also contributed to the development of this software.
-[latest_release]: https://github.com/xiangzhou/GEMMA/releases/tag/v0.96 "Most recent stable release"
+[latest_release]: https://github.com/genetics-statistics/GEMMA/releases/tag/v0.96 "Most recent stable release"
diff --git a/test/test_suite.sh b/test/test_suite.sh
index d1dbb3c..2b2ed0f 100755
--- a/test/test_suite.sh
+++ b/test/test_suite.sh
@@ -11,7 +11,7 @@ testCenteredRelatednessMatrixK() {
assertEquals "3763600" `wc -w < output/mouse_hs1940.cXX.txt`
# assertEquals "15f680c" `md5sum < output/mouse_hs1940.cXX.txt | head -c 7`
assertEquals "0.335" `head -c 5 output/mouse_hs1940.cXX.txt`
- # FIXME: The following test fails in the Guix build system (https://github.com/xiangzhou/GEMMA/issues/55)
+ # FIXME: The following test fails in the Guix build system (https://github.com/genetics-statistics/GEMMA/issues/55)
assertEquals "24.9799" `awk '{s+=substr($1,0,6)}END{print s}' output/mouse_hs1940.cXX.txt`
}