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authorPeter Carbonetto2017-07-18 13:35:11 -0500
committerPeter Carbonetto2017-07-18 13:35:11 -0500
commit8de8f701755b3dc4c042591541aa86bfda02f36b (patch)
treeca49ffd2b0570ed85a8b42a8dd5a09ef6dbfbb55
parent66e2499abdeb663034721425ad6e8efb3340ad99 (diff)
downloadpangemma-8de8f701755b3dc4c042591541aa86bfda02f36b.tar.gz
Fixed failing test. New test report summary:
tests passed: 13 tests failed: 0 tests total: 13 success rate: 100%
-rwxr-xr-xrun_tests.sh6
-rwxr-xr-xtest/test_suite.sh2
2 files changed, 4 insertions, 4 deletions
diff --git a/run_tests.sh b/run_tests.sh
index 181f687..1b220b0 100755
--- a/run_tests.sh
+++ b/run_tests.sh
@@ -1,6 +1,6 @@
#!/usr/bin/env bash
-# download shunit2 in order to run tests (see INSTALL.md)
-
+# The "tr" command fixes the ^M characters in the output.
cd test
-./test_suite.sh | tee /dev/stderr | grep -q 'success rate: 100%'
+./test_suite.sh 2>&1 | tr '\r' '\n' > test.log
+cat test.log | grep -q 'success rate: 100%'
diff --git a/test/test_suite.sh b/test/test_suite.sh
index f1a1c6f..18c9ee9 100755
--- a/test/test_suite.sh
+++ b/test/test_suite.sh
@@ -12,7 +12,7 @@ testCenteredRelatednessMatrixK() {
# assertEquals "15f680c" `md5sum < output/mouse_hs1940.cXX.txt | head -c 7`
assertEquals "0.335" `head -c 5 output/mouse_hs1940.cXX.txt`
# FIXME: The following test fails in the Guix build system (https://github.com/xiangzhou/GEMMA/issues/55)
- assertEquals "29.691" `awk '{s+=substr($1,0,6)}END{print s}' output/mouse_hs1940.cXX.txt`
+ assertEquals "24.9799" `awk '{s+=substr($1,0,6)}END{print s}' output/mouse_hs1940.cXX.txt`
}
testUnivariateLinearMixedModel() {