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| author | Pjotr Prins | 2018-09-28 09:37:36 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2018-09-28 09:37:36 +0000 |
| commit | 8597ff255020980a7e79603331b5d1dd6a7a42b9 (patch) | |
| tree | d2314aa0bcb7f824e80a33ebbc324277480e335b | |
| parent | 1fdd4ca1ae891ff9dd3736e6ed94bc01c3423dfd (diff) | |
| download | pangemma-8597ff255020980a7e79603331b5d1dd6a7a42b9.tar.gz | |
Atlas compilation (still not working)
| -rw-r--r-- | INSTALL.md | 5 | ||||
| -rw-r--r-- | Makefile | 5 |
2 files changed, 9 insertions, 1 deletions
diff --git a/INSTALL.md b/INSTALL.md index cdb3096..e6e3908 100644 --- a/INSTALL.md +++ b/INSTALL.md @@ -69,6 +69,11 @@ To test with another dependency, e.g. GSLv1 env GUIX_PACKAGE_PATH=../guix-bioinformatics/ guix environment -C guix --ad-hoc gcc gdb gfortran:lib gsl1 eigen openblas zlib bash ld-wrapper perl +or replace openblas with atlas + + env GUIX_PACKAGE_PATH=~/izip/git/opensource/genenetwork/guix-bioinformatics/ ~/.config/guix/current/bin/guix environment -C guix --ad-hoc gcc gdb gfortran:lib gsl1 eigen lapack atlas zlib bash ld-wrapper perl + make clean && make WITH_OPENBLAS= WITH_ATLAS=1 + #### GNU Guix reproducible build system One of the challenges of developing software is dealing with diff --git a/Makefile b/Makefile index 916115e..17bad5f 100644 --- a/Makefile +++ b/Makefile @@ -65,6 +65,7 @@ DEBUG = 1 # DEBUG mode, set DEBUG=0 for a releas PROFILING = # Add profiling info SHOW_COMPILER_WARNINGS = WITH_OPENBLAS = 1 # Without OpenBlas uses LAPACK +WITH_ATLAS = # In place of OpenBlas(?) WITH_LAPACK = # Force linking LAPACK (if OpenBlas lacks it) WITH_GSLCBLAS = # Force linking gslcblas (if OpenBlas lacks it) OPENBLAS_LEGACY = # Using older OpenBlas @@ -129,7 +130,9 @@ ifdef WITH_OPENBLAS CPPFLAGS += -DOPENBLAS_LEGACY endif else - CPPFLAGS += -DUSE_BLAS=atlas + ifdef WITH_ATLAS + CPPFLAGS += -DUSE_BLAS=atlas + endif endif ifeq ($(CXX), clang++) |