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| author | Pjotr Prins | 2017-11-09 11:00:47 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2017-11-09 11:00:47 +0000 |
| commit | 2c853b26030dc5e3ff89d7736718abde56c26ca5 (patch) | |
| tree | 494c41dae03f3bef23fddbcc2930ee8864643415 | |
| parent | 09be8f791f8c2d9f7eb5ef5b2f67922c79862024 (diff) | |
| download | pangemma-2c853b26030dc5e3ff89d7736718abde56c26ca5.tar.gz | |
Tests: added bslmm test
| -rw-r--r-- | Makefile | 2 | ||||
| -rwxr-xr-x | test/test_suite.sh | 14 |
2 files changed, 16 insertions, 0 deletions
@@ -102,6 +102,8 @@ else endif endif +.PHONY: all + OUTPUT = $(BIN_DIR)/gemma # Detailed libary paths, D for dynamic and S for static diff --git a/test/test_suite.sh b/test/test_suite.sh index dc6053a..0d56e31 100755 --- a/test/test_suite.sh +++ b/test/test_suite.sh @@ -2,6 +2,20 @@ gemma=../bin/gemma +testBslmm() { + outn=mouse_hs1940_CD8_bslmm + $gemma -g ../example/mouse_hs1940.geno.txt.gz \ + -p ../example/mouse_hs1940.pheno.txt \ + -n 2 -a ../example/mouse_hs1940.anno.txt \ + -bslmm -debug \ + -o $outn -w 1000 -s 10000 -seed 1 + assertEquals 0 $? + outfn1=output/$outn.hyp.txt + outfn2=output/$outn.param.txt + assertEquals "45181.93" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn1` + assertEquals "4043967139.42" `perl -nle 'foreach $x (split(/\s+/,$_)) { $sum += sprintf("%.2f",(substr($x,,0,6))) } END { printf "%.2f",$sum }' $outfn2` +} + testCenteredRelatednessMatrixKFullLOCO1() { outn=mouse_hs1940_full_LOCO1 $gemma -g ../example/mouse_hs1940.geno.txt.gz \ |