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| author | Pjotr Prins | 2025-01-04 01:59:26 -0600 |
|---|---|---|
| committer | Pjotr Prins | 2025-01-04 01:59:26 -0600 |
| commit | 2701a364228d91ba2c52f511ad6619d070e2235b (patch) | |
| tree | bb2f24888472dc37c243bd439964661d7ae9a91d | |
| parent | c6a475370d4c1190685195265cb64ccc7bd17745 (diff) | |
| download | pangemma-2701a364228d91ba2c52f511ad6619d070e2235b.tar.gz | |
Show checkpoints passed with -debug switch
| -rw-r--r-- | VERSION | 2 | ||||
| -rw-r--r-- | doc/code/pangemma.md | 14 | ||||
| -rw-r--r-- | src/checkpoint.cpp | 3 | ||||
| -rw-r--r-- | src/checkpoint.h | 6 |
4 files changed, 21 insertions, 4 deletions
@@ -1 +1 @@ -0.98.5 +0.0.1 diff --git a/doc/code/pangemma.md b/doc/code/pangemma.md index d65245e..223e2ae 100644 --- a/doc/code/pangemma.md +++ b/doc/code/pangemma.md @@ -204,6 +204,20 @@ multiple outputs - in that case we may add filenames. And exits with: **** Checkpoint reached: read-geno-file (normal exit) ``` +# List check points + +When you compile PanGEMMA with debug information + +``` +make debug +``` + +and run a computation with the '-debug' switch it should output the check-points it passes. You should see something like + +``` +**** DEBUG: checkpoint read-geno-file passed with ./example/mouse_hs1940.geno.txt.gz in src/gemma_io.cpp at line 874 in ReadFile_geno +``` + # Other ## Example diff --git a/src/checkpoint.cpp b/src/checkpoint.cpp index 6fcc1a2..a37c1be 100644 --- a/src/checkpoint.cpp +++ b/src/checkpoint.cpp @@ -26,7 +26,8 @@ using namespace std; -void checkpoint(string msg, string filename) { +void checkpoint_run(string msg, string filename, string srcfilename, int line, string funcname) { + is_debug_mode() && std::cerr << "**** DEBUG: checkpoint " << msg << " passed with " << filename << " in " << srcfilename << " at line " << line << " in " << funcname << endl; if (msg == checkpoint_name) { cerr << "**** Checkpoint reached: " << msg << " (normal exit)" << endl; exit(0); diff --git a/src/checkpoint.h b/src/checkpoint.h index 7a70855..2792fac 100644 --- a/src/checkpoint.h +++ b/src/checkpoint.h @@ -20,12 +20,14 @@ #ifndef __CHECKPOINT_H__ #define __CHECKPOINT_H__ -#include <string> +#include <debug.h> using namespace std; extern string checkpoint_name; -void checkpoint(string msg, string filename); +void checkpoint_run(string msg, string filename, string srcfilename, int line, string funcname); +#define checkpoint(msg, fname) \ + checkpoint_run(msg, fname, __FILE__, __LINE__, __SHOW_FUNC) #endif |