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| author | Pjotr Prins | 2017-07-08 10:21:07 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2017-07-08 10:21:07 +0000 |
| commit | 0e60c628ef08638288ea3f682e401a2217df1c43 (patch) | |
| tree | 0bf67c872f0fe21eaa97e572fbbf0d454ca9ef54 | |
| parent | c98b827b0b4dc7d6f24c60bb2cb4658754bc911a (diff) | |
| download | pangemma-0e60c628ef08638288ea3f682e401a2217df1c43.tar.gz | |
README: some links to INSTALL.md
| -rw-r--r-- | INSTALL.md | 4 | ||||
| -rw-r--r-- | README.md | 16 |
2 files changed, 11 insertions, 9 deletions
@@ -23,6 +23,8 @@ dependencies: ### Bioconda +(Note Bioconda install is a work in [progress](https://github.com/xiangzhou/GEMMA/issues/52) + Recent versions of GEMMA can be installed with [BioConda](http://ddocent.com/bioconda/) without root permissions using the following command @@ -31,7 +33,7 @@ command ### GNU Guix -The GNU Guix package manager can install recent versions of GEMMA +The GNU Guix package manager can install recent versions of [GEMMA](https://www.gnu.org/software/guix/packages/g.html) using the following command guix package -i gemma @@ -120,21 +120,20 @@ of this.* ## Setup -There are two ways to install GEMMA: +To install GEMMA you can 1. Download the precompiled binaries (64-bit Linux and Mac only). -2. Compile the GEMMA executable from source. +2. Use existing package managers, see [INSTALL.md](INSTALL.md). -The first option is simpler, and is therefore recommended for -most users. +3. Compile the GEMMA executable from source. Compiling from source takes more work, but can boost performance of the program, especially when using specialized C++ compilers and numerical libraries. -In both cases, we recommend downloading the -[latest stable release][latest_release] instead of the Github repository. +Source code and [latest stable release][latest_release] are available +from the Github repository. ### Precompiled binaries @@ -162,8 +161,6 @@ errors. ### Building from source -*Provde a brief list the dependencies here.* - *We provide a simple Makefile which will need to be customized; please see the comments at the top of the Makefile. Explain why we automatically generate a Makefile using programs such as CMake or @@ -179,6 +176,9 @@ change the library paths in the Makefile accordingly. subdirectory into the `src` directory of the GEMMA repository. (It was last tested using Eigen version 3.3.3.) +More information on source code, dependencies and installation can be +found in [INSTALL.md](INSTALL.md). + ## Credits The *GEMMA* software was developed by: |