diff options
| author | Pjotr Prins | 2017-10-20 08:10:39 +0000 |
|---|---|---|
| committer | Pjotr Prins | 2017-10-23 13:54:05 +0000 |
| commit | b42a02d02b3d9384b1da55bd091f0f89c808b626 (patch) | |
| tree | 4fd66b70ce7eb660dcb98c38a7f5309ac43195e8 /.travis.yml | |
| parent | 12558c358150bfed99874b791932bbe06a107263 (diff) | |
| download | pangemma-b42a02d02b3d9384b1da55bd091f0f89c808b626.tar.gz | |
Travis-ci:
- Disabled gcc-6 since we develop with later tools anyway
- Turned the release test into a simple integration test
- Adding MacOSX on Travis-ci
Tests: Adding tests for Plink w. LOCO
Safety: Introduce strtok_safe to get rid of segfaults
Diffstat (limited to '.travis.yml')
| -rw-r--r-- | .travis.yml | 58 |
1 files changed, 32 insertions, 26 deletions
diff --git a/.travis.yml b/.travis.yml index bf1cf11..3607992 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,46 +1,52 @@ language: C++ -compiler: gcc matrix: + # OSX testing is under development + # allow_failures: + # - os: osx include: - os: linux + compiler: gcc addons: apt: sources: - ubuntu-toolchain-r-test packages: + # Our dev environment is a more recent GNU C++ and GSL2 - g++-4.9 + - libopenblas-dev + - zlib1g-dev + - libeigen3-dev + - libgsl0-dev + - liblapack-dev + # - gfortran-dev for static env: - - MATRIX_EVAL="CC=gcc-4.9 && CXX=g++-4.9" - - os: linux - addons: - apt: - sources: - - ubuntu-toolchain-r-test - packages: - - g++-6 + - MATRIX_EVAL="CC=gcc-4.9 && CXX=g++-4.9 && EIGEN_INCLUDE_PATH=/usr/include/eigen3" + - os: osx + compiler: clang env: - - MATRIX_EVAL="CC=gcc-6 && CXX=g++-6" + - MATRIX_EVAL="EIGEN_INCLUDE_PATH=/usr/local/include/eigen3" +# - os: linux +# addons: +# apt: +# sources: +# - ubuntu-toolchain-r-test +# packages: +# - g++-6 +# env: +# - MATRIX_EVAL="CC=gcc-6 && CXX=g++-6" before_install: - - sudo apt-get -qq update - - sudo apt-get install -y libopenblas-dev zlib1g-dev - - sudo apt-get install -y libeigen3-dev - - sudo apt-get install -y libgsl0-dev - - sudo apt-get install -y liblapack-dev - # for the static release version we need the following - # - sudo apt-get install -y gfortran-dev - - dpkg -l - - eval "${MATRIX_EVAL}" - - $CXX --version + - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update && brew install gsl openblas zlib eigen lapack ; fi script: + - echo $MATRIX_EVAL - eval "${MATRIX_EVAL}" - $CXX --version # build and test debug version - - make CXX=$CXX WITH_OPENBLAS=1 OPENBLAS_LEGACY=1 -j 4 - - time make CXX=$CXX WITH_OPENBLAS=1 check - - make clean - # build and test release version - - make CXX=$CXX DEBUG= FORCE_DYNAMIC=1 WITH_OPENBLAS=1 OPENBLAS_LEGACY=1 -j 4 - - time make CXX=$CXX DEBUG= WITH_OPENBLAS=1 check + - make CXX=$CXX EIGEN_INCLUDE_PATH=$EIGEN_INCLUDE_PATH WITH_OPENBLAS=1 OPENBLAS_LEGACY=1 -j 4 + - time make CXX=$CXX WITH_OPENBLAS=1 EIGEN_INCLUDE_PATH=$EIGEN_INCLUDE_PATH WITH_OPENBLAS=1 OPENBLAS_LEGACY=1 check + # - make clean + # build and test release version (integration test mostly) + # - make CXX=$CXX EIGEN_INCLUDE_PATH=$EIGEN_INCLUDE_PATH DEBUG= FORCE_DYNAMIC=1 WITH_OPENBLAS=1 OPENBLAS_LEGACY=1 -j 4 + # - time make CXX=$CXX DEBUG= WITH_OPENBLAS=1 fast-check # build static release (fast-check only) # - make clean # - make CXX=$CXX TRAVIS_CI=1 -j 4 fast-check |