| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-03-18 | Use proper formatting for License lists | Dennis E. Mungai | |
| Also updates the Arrayfire fetch URL to the one hosted by Arrayfire as Github's generated tarballs do not package the required submodules. | |||
| 2016-03-18 | WIP: Add varscan. | Roel Janssen | |
| The JAR construction cannot contain a wild-card. That has to be fixed. | |||
| 2016-03-18 | Bump version to v3.3.3 | Dennis E. Mungai | |
| Also change licensing schema with #prefix (es). Solves namespace problems. Also added wget as an input (As it's needed as a fallback incase checksums for Boost are invalid). | |||
| 2016-03-16 | Add delly. | Roel Janssen | |
| 2016-03-16 | Add contra. | Roel Janssen | |
| 2016-03-15 | Added Java packages, working, WIP and ON HOLD. | Roel Janssen | |
| 2016-03-12 | Add a few more deps (needed glut) | Dennis E. Mungai | |
| Intel's Beignet package still can't build on guix, complains about libclang. | |||
| 2016-03-12 | Add Intel Beignet to guix | Dennis E. Mungai | |
| This is Intel's Beignet, Intel's OpenCL platform for their GPUs and CPUs. | |||
| 2016-03-12 | WIP | Dennis E. Mungai | |
| Work in progress. Investigate, | |||
| 2016-03-11 | Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics | Roel Janssen | |
| 2016-03-11 | Added test suite to pindel package. | Roel Janssen | |
| 2016-03-11 | Small compile fixes for pindel | pjotrp | |
| 2016-03-10 | Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics | Roel Janssen | |
| 2016-03-10 | Add multiple packages. | Roel Janssen | |
| - tabixpp - smithwaterman - multichoose - fsom - filevercmp - fastahack - bash-tap - vcflib | |||
| 2016-03-09 | spaces | pjotrp | |
| 2016-03-09 | fix | Pjotr Prins | |
| 2016-03-09 | Small fixed | Pjotr Prins | |
| 2016-03-09 | Merge branch 'master' of github.com:roelj/guix-bioinformatics into roelj | Pjotr Prins | |
| 2016-03-09 | Added pindel without test suite. | Roel Janssen | |
| 2016-03-09 | Added submodules to run tests, and provided an override to run the tests. | Roel Janssen | |
| 2016-03-08 | pocl updated with all dependencies. | Dennis E. Mungai | |
| Have fun. | |||
| 2016-03-08 | Merge branch 'master' of github.com:Brainiarc7/guix-bioinformatics into dennis | Pjotr Prins | |
| 2016-03-08 | Change license handling | Dennis E. Mungai | |
| Still fails to build. Obscure ruby error. | |||
| 2016-03-08 | Package now builds on GNU Guix | Dennis E. Mungai | |
| All done. | |||
| 2016-03-08 | Wrong hash, correct on build | Dennis E. Mungai | |
| Tertiary OpenCL headers package. | |||
| 2016-03-08 | Notes: Requires OpenCL headers to build. | Dennis E. Mungai | |
| Port Khronos OpenCL headers to guix before building this package. | |||
| 2016-03-08 | Add Khronos OpenCL ICD | Dennis E. Mungai | |
| Ported to guix. | |||
| 2016-03-08 | Add ocl-icd package to GNU Guix | Dennis E. Mungai | |
| Added the Opensource reference OpenCL ICD, a dependency for Arrayfire and other OpenCL runtimes on GNU Guix | |||
| 2016-03-07 | Added transitional package llvm-3.7.1 | Dennis E. Mungai | |
| Needed by POCL, version bumped. | |||
| 2016-03-07 | Add clang-runtime as a dependency. | Dennis E. Mungai | |
| 2016-03-07 | python2-pil was missing from gn2 | pjotrp | |
| 2016-03-05 | Guix paths to the tools | pjotrp | |
| 2016-03-04 | Updated hash values. | Dennis E. Mungai | |
| Changed with new commits to Arrayfire. | |||
| 2016-03-04 | Bumped up to v.3.3.1-hotfix. | Dennis E. Mungai | |
| Fixes a bunch of build bugs | |||
| 2016-03-04 | Add afnumpy to guix | Dennis E. Mungai | |
| afnumpy is a GPGPU - accelerated drop-in to numpy | |||
| 2016-03-04 | python-mysqlclient: propagate the shared lib | pjotrp | |
| 2016-03-04 | Merge branch 'master' of github.com:genenetwork/guix-bioinformatics | pjotrp | |
| 2016-03-04 | GN2 is now a self contained package (except for the database) | pjotrp | |
| 2016-03-04 | Merge pull request #8 from roelj/master | Pjotr Prins | |
| Add FREEC. | |||
| 2016-03-03 | Fix for home-page, synopsis and description of vcflib. | Roel Janssen | |
| 2016-03-03 | License fix for Freebayes. | Roel Janssen | |
| 2016-03-03 | Added genenetwork2-files-small | pjotrp | |
| 2016-03-03 | Switch to cmake build system. | Dennis E. Mungai | |
| 2016-03-02 | Add and port the Portable OpenCL package to guix | Dennis E. Mungai | |
| This is the POCL port to guix. It provides an open source , vendor neutral OpenCL ICD (Installable Client Driver), suitable for testing as a reference OpenCL platform. Regards, Brainiarc7. | |||
| 2016-03-02 | Add vcflib. | Roel Janssen | |
| 2016-03-02 | Add FREEC. | Roel Janssen | |
| 2016-03-01 | Use the original Makefile to statically compile lz4. | Roel Janssen | |
| 2016-03-01 | Changed Sambamba source. | Roel Janssen | |
| 2016-03-01 | Add freebayes. | Roel Janssen | |
| 2016-03-01 | Merge branch 'master' of https://github.com/genenetwork/guix-bioinformatics | Roel Janssen | |
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
| aboutsummaryrefslogtreecommitdiff |