| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-02-14 | Add pytest and hypothesis for automated testing | Frederick Muriuki Muriithi | |
| In the effort to improve automated testing, this commit adds two python modules that are useful for the tests. | |||
| 2022-02-14 | gn: Upstream 2 julia packages | Efraim Flashner | |
| 2022-02-09 | gn: genenetwork2: Add python-ijson. | Alexander Kabui | |
| * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-ijson. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> | |||
| 2022-02-09 | gn: genenetwork3: Add r-ctl. | Alexander Kabui | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add r-ctl. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> | |||
| 2022-02-05 | gn: tissue: Add guile to inputs. | Arun Isaac | |
| * gn/packages/gemini.scm (tissue)[inputs]: Add guile-3.0. | |||
| 2022-02-05 | gn: Add tissue. | Arun Isaac | |
| * gn/packages/gemini.scm (tissue): New variable. | |||
| 2022-02-04 | remove upstreamed cl-css-lite | jgart | |
| 2022-02-04 | gn: packages: lisp: remove upstreamed cl-snakes | jgart | |
| 2022-02-02 | gn: packages: lisp: add cl-css-lite | jgart | |
| 2022-01-31 | gn: julia package updates | Efraim Flashner | |
| 2022-01-27 | gn: julia: Prepare packages for upstreaming | Efraim Flashner | |
| 2022-01-27 | julia package cleanup | Efraim Flashner | |
| 2022-01-27 | gn: packages: emacs-xyz: add emacs-trident-mode. | jgart | |
| 2022-01-26 | add notebook-tools | jgart | |
| 2022-01-26 | add jrep | jgart | |
| 2022-01-26 | gn: packages: crates-io: add rust-clap-for-jrep | jgart | |
| 2022-01-26 | gn: packages: quality-control: remove utf-8-lineseparator | jgart | |
| * upstreamed to GNU Guix | |||
| 2022-01-26 | gn: genenetwork: Disable tests on python-seaborn. | Arun Isaac | |
| * gn/packages/genenetwork.scm (python-seaborn-without-tests, python-pingouin-with-working-python-seaborn): New variables. (genenetwork3)[propagated-inputs]: Replace python-pingouin with python-pingouin-with-working-python-seaborn. | |||
| 2022-01-26 | gn: packages: lisp: Add cl-scribble. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-meta. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-fare-memoization. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-lorem-ipsum. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add sbcl-fwoar-lisputils. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-2am. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add cl-defstar. | jgart | |
| 2022-01-26 | gn: packages: Add cl-snakes. | jgart | |
| 2022-01-26 | gn: packages: lisp: Add sbcl-rollbar. | jgart | |
| 2022-01-26 | gn: packages: utf-8-lineseparator: Don't use tag name in version field. | jgart | |
| 2022-01-25 | gn: Fix failing python-twint build. | BonfaceKilz | |
| * gn/packages/twint.scm (python-aiohttp-3.7.2): Delete it. (python-aiohttp-socks-0.5.5): Delete it. (python-yarl-1.6.2): Delete it. (python-twint) [propagated-inputs]: Replace python-aiohttp-socks-0.5.5 with python-aiohttp-socks and python-yarl-1.6.2 with python-yarl. | |||
| 2022-01-24 | gn: quality-control: add libcsv | jgart | |
| 2022-01-24 | gn: utf-8-lineseparator: Update to cj7. | jgart | |
| 2022-01-23 | gn: Add verkko. | Efraim Flashner | |
| 2022-01-23 | gn: graphaligner: Fix building and update to 1.0.14 | Efraim Flashner | |
| 2022-01-22 | gn: gemma-wrapper: added coreutils and note on testing | pjotrp | |
| 2022-01-22 | gn: gemma-wrapper: updated to 0.99.6 | pjotrp | |
| 2022-01-22 | gn: gemma-wrapper: updated to 0.99.6 | pjotrp | |
| 2022-01-13 | gn: quality-control: Add utf-8-lineseparator. | jgart | |
| * gn/packages/quality-control.scm: New file. | |||
| 2022-01-09 | gn: Remove upstreamed node packages | Efraim Flashner | |
| 2022-01-09 | gn: Unconditionally use current rust package. | Efraim Flashner | |
| 2022-01-09 | gn: check for new releases of gitea | Efraim Flashner | |
| 2022-01-06 | gn: genenetwork: Add diffutils | BonfaceKilz | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add diffutils. | |||
| 2022-01-05 | Revert "gn: genenetwork: Add pudb" | BonfaceKilz | |
| This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra dependency by running something like: ``` guix shell -L /home/bonface/projects/guix-bioinformatics \ -L /home/bonface/projects/guix-past/modules -C \ -D pudb -f guix.scm ``` | |||
| 2022-01-05 | gn: genenetwork: Add pudb | BonfaceKilz | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add pudb for trouble-shooting purposes. | |||
| 2022-01-01 | genenetwork3: updated and disabled tests | Pjotr Prins | |
| 2022-01-01 | genenetwork2: put a hack in to fix failing build. Please amend | Pjotr Prins | |
| 2021-12-29 | gnu: Add python2-bx-python. | Arun Isaac | |
| python2-bx-python has been removed from upstream Guix. * gn/packages/bioinformatics.scm (python2-bx-python): New variable. | |||
| 2021-12-29 | Reference non-public rust packages using @@. | Arun Isaac | |
| rust-1.47 and rust-1.49 are no longer exported from (gnu packages rust). * gn/packages/bioinformatics.scm (gfaffix): Reference rust-1.49 using @@. * gn/packages/crates-io.scm (rust-handlegraph-0.7): Reference rust-1.47 using @@. | |||
| 2021-12-29 | Fix typo in import of (gnu packages textutils). | Arun Isaac | |
| * gn/packages/genenetwork.scm: Import (gnu packages textutils), not (gn packages textutils). | |||
| 2021-12-29 | gn: ldc: Use ldc-bootstrap-0.17. | Arun Isaac | |
| Upstream has renamed ldc-bootstrap to ldc-bootstrap-0.17. * gn/packages/dlang.scm (ldc): Inherit from ldc-bootstrap-0.17 instead of ldc-bootstrap. [native-inputs]: Replace ldc-bootstrap with ldc-bootstrap-0.17. | |||
| 2021-12-21 | gn/packages/genenetwork.scm: Use csvdiff from textutils. | BonfaceKilz | |
| * gn/packages/genenetwork.scm (genenetwork2): Use updated version of csvdiff from textutils. | |||
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
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