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2020-09-15ratspub: Add support for building docker containerEfraim Flashner
2020-09-14gn: adjust to package movementsEfraim Flashner
2020-09-13r-qtl moved to (gnu packages cran)Efraim Flashner
2020-09-10ratspub: create containerEfraim Flashner
2020-09-09ratspub: Update to 0.4.2Efraim Flashner
2020-09-07ratpub: Use js-filesaver-1.3.2.Efraim Flashner
2020-09-06vg: Update to 1.26.1.Efraim Flashner
2020-09-06jupyterhub: python-docker-py renamed to python-dockerEfraim Flashner
2020-09-03gn: js-md5: Use correct md5 javascript libraryBonfaceKilz
* gn/packages/javascript.scm (javascript-md5): Delete it. * gn/packages/javascript.scm (js-md5): Use correct library. Use 2.10.0 from <https://github.com/blueimp/JavaScript-MD5>. See: <https://github.com/genenetwork/genenetwork2/issues/435>
2020-09-03gn: Provide genotypes folder in container.Efraim Flashner
2020-09-03python24-qtlreaper: Update to 1.11-gn1.442c217.Efraim Flashner
Also re-indent.
2020-09-03move python24-mysqlclient to 1.2.3.Efraim Flashner
2020-09-02ratspub: Update to 0.4.1.Efraim Flashner
2020-09-01update vgEfraim Flashner
2020-08-31gn: python3-genenetwork2: Propagate python-mypyBonfaceKilz
2020-08-31rust-gfa-0.6 upstreamedEfraim Flashner
2020-08-30gn: remove upstreamed crateEfraim Flashner
2020-08-30gn: Remove duplicate rust-gfaEfraim Flashner
2020-08-30Add vgEfraim Flashner
2020-08-28New package python-pandas-plinkpjotrp
2020-08-28Updating gemma-gn2pjotrp
2020-08-28Starting at gn-proxypjotrp
2020-08-28Add racket to genenetwork2pjotrp
2020-08-28Remove unused packagespjotrp
2020-08-26updatesEfraim Flashner
2020-08-26add mysql-5.0, mysql-5.5Efraim Flashner
2020-08-20gn: python3-genenetwork2: Propagate python-rpy2BonfaceKilz
* gn/packages/genenetwork.scm: (python3-genenetwork2)[propagated-inputs]: Add python-rpy2
2020-08-19gn: Add gfautil.Efraim Flashner
2020-08-18genenetwork1: patch more filesEfraim Flashner
2020-08-18gn: Use local links for genenetwork1.Efraim Flashner
2020-08-18gn: Add python24-rpy2Efraim Flashner
2020-08-18gn: Add r-minimal-2 and some R packagesEfraim Flashner
2020-08-16genenetwork1: Extend, don't replace PythonPath in service.Efraim Flashner
2020-08-14gn: ratspub: Update to 0.4.0.Efraim Flashner
2020-08-10gn: genenetwork2: Add pillow as one of the propagated-inputsBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python2-pillow
2020-08-09Remove upstreamed python packages.Efraim Flashner
upstreamed python-certipy, python-pamela, python-cfgraph. python-retrying already upstream
2020-08-09gn: python-schema-salad: Use same version of python-ruaml.yaml asEfraim Flashner
bh20-seq-resource
2020-08-05gn: python3-genenetwork2: Update package definitionBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [source]: Use github source tree to avoid build failures in `setup.py` which used old python 2 syntax. [propagated-inputs]: Use python-wrapper that maps `python3` command to `python`. Remove "python" from inherited propagated input. Remove unittest2 and mock inputs since they are already defined in python3's standard library. [arguments]: Inherit package arguments from genenetwork2 and only update '#phases and '#python args.
2020-08-05gn: python-htmlgen: Update to 2.0.0BonfaceKilz
* gn/packages/python.scm (python-htmlgen): [version]: Bump version to 2.0.0. [source]: Update hash. [propagated-inputs]: Remove "python-typing" since it causes errors to be raised when importing htmlgen in python3.8. Also, in Python 3.8 it's already provided by the standard library.
2020-08-05gn: Update gitea to 1.12.3.Efraim Flashner
2020-08-04gn: python3-genenetwork2: Remove hard coded variablesBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Use a filter to get the lists of packages to delete from the inherited propagated input.
2020-08-04gn: genenetwork2: Remove duplicate python2-scipy inputBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2): Remove duplicate propagated-input
2020-08-04gn: python3-genenetwork2: Inherit from genenetwork2BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Rewrite package definiton to inherit from genenetwork2 package.
2020-08-04Merge branch 'build/python3-migration'BonfaceKilz
2020-08-04gn: python3-genenetwork: Rename unittest2 inputBonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove duplicate requests inputBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Delete duplicate input
2020-08-04gn: python3-genenetwork2: Remove unnecessary commentsBonfaceKilz
2020-08-04gn: python3-genenetwork2: Remove python2-parallelBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork): Remove deprecated package
2020-08-04gn: python3-genenetwork2: Remove python-qtlreaperBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Remove deprecated python2-qtlreaper
2020-08-04gn: python3-genenetwork2: Add new package definitionBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): Add it. Same as genenetwork2 for now.
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