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2024-06-20Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformaticsShepherd on Tux02
2024-06-20Rename penguin2->tux02Shepherd on Tux02
2024-06-20genecup: use keras without testsPjotr Prins
2024-06-14gn-uploader: (javascript-jquery): New dependencyFrederick Muriuki Muriithi
JQuery is needed to get the bootstrap plugins working correctly.
2024-06-13gn-uploader: javascript-bootstrap: New dependencyFrederick Muriuki Muriithi
Bundle javascript-bootstrap with gn-uploader for styling.
2024-06-12gn-uploader: Fix indentation.Frederick Muriuki Muriithi
2024-05-09Fix path to error GIFs.Munyoki Kilyungi
Co-authored-by: Alexander <alexanderkabua@gmail.com>
2024-04-19gn: Add hifiasm.Arun Isaac
* gn/packages/bioinformatics.scm (hifiasm): New variable.
2024-04-09gn: javascript: Fix failing javascript-xterm build.Munyoki Kilyungi
* gn/packages/javascript.scm (javascript-xterm): Update hash. [native-inputs]: Move this ... [propagated-inputs]: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-04-05genenetwork2-stable: update hashPjotr Prins
2024-04-04Add recent javascript-d3 libraryPjotr Prins
2024-04-04javascript-d3panels: add variable and add to genenetwork2Pjotr Prins
2024-04-03genenetwork3-stable: update hashPjotr Prins
2024-04-03genenetwork3-stable: modify files that use R scriptsPjotr Prins
2024-04-03genenetwork3-stable: modify files using R scriptsPjotr Prins
2024-04-03genenetwork3-stable: copy other R scripts into destinationPjotr Prins
2024-04-03genenetwork3-stable: copy R script into destinationPjotr Prins
2024-04-03genenetwork3-stable: patch path to R script - missing bracketPjotr Prins
2024-04-03genenetwork3-stable: patch path to R scriptPjotr Prins
2024-04-02genenetwork3-stable: Update commit and hash.pjotrp
2024-04-02genenetwork3-stable: Update commit and hash.pjotrp
2024-04-02gn-uploader: update commit and hash.Frederick Muriuki Muriithi
2024-04-01gn: genenetwork3-stable: disable testing for nowpjotrp
* gn/packages/genenetwork.scm (genenetwork3-stable) disable testing
2024-04-01gn: genenetwork3: sorted package names and moved python-test and ↵pjotrp
python-test-mock into propagated inputs * gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: add testing
2024-04-01gn: Add genenetwork3-production variantpjotrp
* gn/packages/genenetwork.scm (genenetwork3-stable): New variable.
2024-04-01gn: genenetwork3: sorted package names and added R to propagated inputs to ↵pjotrp
make Rscript available on the path * gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r.
2024-04-01gn: genenetwork3: reformat package list AND fix tabs2spacespjotrp
* gn/packages/genenetwork.scm (genenetwork3)
2024-03-24genenetwork-stable: fix URL problem R/qtl apipjotrp
2024-03-21gn: genenetwork3: Add python-biopython.Alexander_Kabui
* gn/packages/genenetwork.scm (genenetwork3) [propated-inputs]: Add python-biopython. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-21gn-uploader: update commit and hash.Frederick Muriuki Muriithi
2024-03-19Add javascript-linkify, javascript-linkify-html to genenetwork.Alexander_Kabui
* gn/packages/genenetwork.scm (genenetwork2) [propagated-inputs]: Add javacript-linkify and javascript-linkify-html. Acked-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-19gn: javascript: Add javascript-linkify, javascript-linkify-html.Alexander_Kabui
* gn/packages/javascript.scm: (javascript-linkify): New package. (javascript-linkify-html): New package. Acked-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-03-19gn-uploader: update commit and hash.Frederick Muriuki Muriithi
2024-03-15gn-uploader: Update commit and hash.Frederick Muriuki Muriithi
2024-03-13genenetwork2: Update commit and hash - get commit with bugfixes.Frederick Muriuki Muriithi
2024-03-11gn: Add genenetwork2-production variantpjotrp
* gn/packages/genenetwork.scm (genenetwork-stable): New variable.
2024-03-11gn: Add python-toil.Arun Isaac
* gn/packages/cwl.scm (python-toil): New variable.
2024-03-11gn: Add python-cwltool.Arun Isaac
* gn/packages/cwl.scm (python-cwltool): New variable.
2024-03-11gn: Add python-prefixed.Arun Isaac
* gn/packages/python.scm (python-prefixed): New variable.
2024-03-11gn: Add python-pypubsub.Arun Isaac
* gn/packages/python.scm (python-pypubsub): New variable.
2024-03-11gn: Add python-enlighten.Arun Isaac
* gn/packages/python.scm (python-enlighten): New variable.
2024-03-11gn: Add python-addict.Arun Isaac
* gn/packages/python.scm (python-addict): New variable.
2024-03-11gn: Add python-typing-extensions-4.10.Arun Isaac
* gn/packages/python.scm (python-typing-extensions-4.10): New variable.
2024-03-11gn: Add python-rdflib-jsonld.Arun Isaac
python-rdflib-jsonld has been removed from upstream Guix. * gn/packages/python.scm (python-rdflib-jsonld): New variable.
2024-03-08gn-uploader: Use more modern list-style inputs. Fix version number.Frederick Muriuki Muriithi
2024-03-08gn-uploader: Update package definitionFrederick Muriuki Muriithi
2024-03-06genenetwork2: update commit and hashFrederick Muriuki Muriithi
Removes use of configs from `gn2.utility.tools` module since they are not up to date.
2024-03-05genenetwork2: update commit and hash to fetch configs from appFrederick Muriuki Muriithi
2024-03-05genenetwork2: Fix commit and hash.Frederick Muriuki Muriithi
2024-03-05genenetwork2: Update commit and hash.Frederick Muriuki Muriithi