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2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-testfixtures): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-clickclick): New variable.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-tests): New package.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-ujson): New package.
2018-12-14gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-python-version): New package.
2018-12-14CWL: fetching from git repo to get the latestpjotrp
2018-12-14CWL final packages - tests pass in principle (except for some networking)pjotrp
2018-12-12CWL buildsPjotr Prins
2018-12-12CWLPjotr Prins
2018-12-11CWL: updatingPjotr Prins
2018-12-03Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformaticsMuriithi Frederick Muriuki
2018-12-03gn: Add dependencyMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (python-pillow): Add new dependency
2018-11-28Add missing packageMuriithi Frederick Muriuki
* Add python-ipython to the list of propagated packages.
2018-11-20Update GN2 install and gemma-wrapperPjotr Prins
2018-11-03Add sqlitepjotrp
2018-10-16Updated gemma and openblasPjotr Prins
2018-10-14Merge branch 'master' of gitlab.com:genenetwork/guix-bioinformaticspjotrp
2018-10-14ldc: use ldc from mainlinepjotrp
2018-09-24gn: New variables. New dependenciesMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-speaklater,python-flask-mail) New variables. * gn/packages/edash.scm (edash): Add dependencies.
2018-08-23Merge remote-tracking branch 'origin/master'Muriithi Frederick Muriuki
2018-08-23gn: Remove Dependency (python-mako)Muriithi Frederick Muriuki
* gn/packages/edash.scm (python-mako): Remove dependency.
2018-08-08Started on faster-lmm-dev packagepjotrp
2018-08-07gn: Add gunicorn as dependencyMuriithi Frederick Muriuki
* gn/packages/edash.scm (gunicorn): New dependency
2018-08-03Merge remote-tracking branch 'origin/master'Muriithi Frederick Muriuki
2018-07-15gn: New dependenciesMuriithi Frederick Muriuki
* gn/packages/edash.scm: (python-wrapper): New dependency * gn/packages/edash.scm: (python-mako): New dependency * gn/packages/edash.scm: (python-pytest): Test dependency
2018-07-14Update dependencies for building gemmapjotrp
2018-07-13GEMMA devPjotr Prins
2018-07-13gemma-dev scriptpjotrp
2018-06-30gn: Add edashMuriithi Frederick Muriuki
* gn/packages/edash.scm (python-s3transfer-0.1.13): New variable * gn/packages/edash.scm (python-botocore-1.10.48): New variable * gn/packages/edash.scm (python-boto3): New variable * gn/packages/edash.scm (edash): New variable
2018-06-30Merge branch 'master' of gitlab.com:fredmanglis/guix-bioinformaticsMuriithi Frederick Muriuki
* Merge changes to genenetwork3 package.
2018-06-28Update reaper commitMuriithi Frederick Muriuki
2018-06-26Updated python-elasticsearchpjotrp
2018-06-26Ruby ES supportpjotrp
2018-06-21Add python-reaperMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (python-reaper): New package.
2018-06-11Remove PhewasMuriithi Frederick Muriuki
* Phewas depends on an R package that no longer exists at the given url. This breaks the install. Phewas is also not currently used in genenetwork3.
2018-04-08Merge branch 'master' of https://gitlab.com/genenetwork/guix-bioinformaticsMuriithi Frederick Muriuki
2018-04-06Oops, wrong packagePjotr Prins
2018-04-06Two JS packagespjotrp
2018-04-05Added cytoscape-js packagepjotrp
2018-04-04gn: Add package dependenciesMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (genenetwork3): - Add dependency python-cssselect - Add dependency python-htmlgen
2018-04-04gn: Add new packageMuriithi Frederick Muriuki
* gn/packages/python.scm (python-htmlgen): New variable.
2018-03-26Deactivate python 2Muriithi Frederick Muriuki
* With move to genenetwork3, we'll be using Python3, so forcing Python2 is no longer necessary.
2018-03-26gn: Update genenetwork3 definitionMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (genenetwork3): Update package definition. - Deactivate all packages that need Python 2 - Change the source uri for the package definition - Change the commit hash - Change the sha256 hash - Comment out the processing for pylmmcmd in the 'fix-paths' phase
2018-03-22Added qtlreaper for Python3fredpjotrp
2018-03-21gn: genenetwork3: Add new packageMuriithi Frederick Muriuki
* gn/packages/genenetwork.scm (genenetwork3): Add a new package
2018-03-20Adding GN python packages for testingpjotrp
2018-02-15Using elasticsearch latestpjotrp
2018-02-11eventlet added to gunicornPjotr Prins
2018-02-10Added requests and mechanize for testingPjotr Prins
2018-02-10Updated gemma-wrapperpjotrp
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