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AgeCommit message (Collapse)Author
2022-11-16gn: Add graph-genotyper and dependent packagesEfraim Flashner
2022-11-13gn: pgr-tk: Unbundle agc.Efraim Flashner
2022-11-10gn: Add missing imports and package licenses.Efraim Flashner
2022-11-10gn: Add pgr-tkEfraim Flashner
2022-11-07gn: Add missing crateEfraim Flashner
2022-11-03gn: (gn/packages/genenetwork.scm): Add yoyo-migrations as dependencyFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm: add yoyo-migrations as a dependency.
2022-10-30gn: genenetwork2: Do not depend on python-xapian-bindings.Arun Isaac
Now, only genenetwork3 depends on python-xapian-bindings. genenetwork2 makes use of xapian indirectly through the genenetwork3 API. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Remove python-xapian-bindings.
2022-10-28gn: (genenetwork3): Update to 0.1.0-2.faf2739Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.faf2739
2022-10-24gn: Fix ruby module licensesEfraim Flashner
2022-10-24gn: Update crates for upstream changesEfraim Flashner
2022-10-18gn: genenetwork3: Depend on python-xapian-bindings.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-xapian-bindings.
2022-10-18gn: genenetwork3: Depend on python-pymonad.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pymonad.
2022-10-18gn: genenetwork3: Depend on python-click.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork3)[inputs]: Add python-click.
2022-10-11gn: (gn-rust-correlation): Update to 0.1.4-0.b82a93bFrederick Muriuki Muriithi
* gn/packages/crates-io.scm (gn-rust-correlation): 0.1.4-0.b82a93b
2022-10-05gn: (genenetwork2): Update to 3.11-2.1328932Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.1328932
2022-10-05gn: (genenetwork3): Update to 0.1.0-2.fe1b8beFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.fe1b8be
2022-09-30gn: (genenetwork2): Update to 3.11-2.6f1a66bFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.6f1a66b
2022-09-30gn: (genenetwork3): Update to 0.1.0-2.0d365ddFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3): Update to 0.1.0-2.0d365dd
2022-09-30gn: Update gn-rust-correlation to 0.1.4-0.fd85c0fFrederick Muriuki Muriithi
* gn/packages/crates-io (gn-rust-correlation): Update to 0.1.4-0.fd85c0f
2022-09-24gn: Update blobtools.Efraim Flashner
2022-09-20gn: Add blobtools.Efraim Flashner
2022-09-20genecup: Update package.Efraim Flashner
Replace PYTHONPATH with GUIX_PYTHONPATH. Remove trailing #t from phases.
2022-09-20bnw: Update packageEfraim Flashner
Remove trailing #t from phases Replace PYTHONPATH with GUIX_PYTHONPATH
2022-09-16gn: (genenetwork-qc): Update to 0.0.1-2.b735caeFrederick Muriuki Muriithi
* gn/packages/quality-control.scm (genenetwork-qc): Update to 0.0.1-2.b735cae
2022-09-14gn: genenetwork2: Depend on python-xapian-bindings.Arun Isaac
* gn/packages/genenetwork.scm: Import (gnu packages search). (genenetwork2)[propagated-inputs]: Add python-xapian-bindings.
2022-09-14gn: genenetwork2: Depend on python-pymonad.Arun Isaac
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python-pymonad.
2022-09-08gn: genenetwork-qc: Update to 0.0.1-2.38af157.Frederick Muriuki Muriithi
* gn/packages/quality-control.scm (genenetwork-qc) Update to 0.0.1-2.38af157.
2022-09-07gn: genenetwork2: Update to 3.11-2.be09d5a.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.be09d5a.
2022-09-07gn: genenetwork3: Update to 0.1.0-2.1e1c9d8.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.1e1c9d8.
2022-08-31gn: genenetwork-qc: Update to 0.0.1-2.ae1fbc0.Frederick Muriuki Muriithi
* gn/packages/quality-control.scm (genenetwork-qc) Update to 0.0.1-2.ae1fbc0.
2022-08-30gn: genenetwork3: Update to 0.1.0-2.45b9bcb.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.45b9bcb.
2022-08-30gn: genenetwork2: Update to 3.11-2.1c384a1.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.1c384a1.
2022-08-30gn: genenetwork3: Update to 0.1.0-2.9ef2ddc.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork3) Update to 0.1.0-2.9ef2ddc.
2022-08-19Add ldc-bootstrap-0.17 that was deleted in upstream Guix.Arun Isaac
* gn/packages/dlang.scm (ldc-bootstrap-0.17): New variable. (ldc): Use ldc-bootstrap-0.17 from current module instead of from upstream Guix.
2022-08-18 gn: bioinformatics: Add import of moved python-setuptools-scmPjotr Prins
* gn/packages/bioinformatics.scm
2022-08-17gn: genenetwork2: Update to 3.11-2.bc589b2.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2) Update to 3.11-2.bc589b2.
2022-08-15gn: genenetwork2: Update to 3.11-2.3cfd0ec.Frederick Muriuki Muriithi
* gn/packages/crates-io.scm (genenetwork2) Update to 3.11-2.3cfd0ec.
2022-08-15gn: genenetwork3: Update to 0.1.0-2.6db3b2a.Frederick Muriuki Muriithi
* gn/packages/crates-io.scm (genenetwork3) Update to 0.1.0-2.6db3b2a.
2022-08-15gn: gn-rust-correlation: Update to 0.1.4-0.09c579f.Frederick Muriuki Muriithi
* gn/packages/crates-io.scm (gn-rust-correlation) Update to 0.1.4-0.09c579f.
2022-08-08gn: gn-rust-correlation: Update to 0.1.4-0.3492daa.Frederick Muriuki Muriithi
* gn/packages/crates-io.scm (gn-rust-correlation) Update to 0.1.4-0.3492daa.
2022-08-04gn: javascript-jquery-ui: Update to 1.13.2Alexander_Kabui
* gn/packages/javascript.scm (javascript-jquery-ui): Update to 1.13.2. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-08-03gn: javascript-jquery-ui: Remove duplicate package.Alexander_Kabui
javascript-jquery-ui@1.9.1 is packaged twice * gn/packages/javascript.scm (javascript-jquery-ui): Delete duplicate package. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-08-02gn: genenetwork2: Update to 3.11-2.85ad783.Frederick Muriuki Muriithi
* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.85ad783. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-29gn: genenetwork3: Update itFrederick Muriuki Muriithi
* gn/packages/genenetwork.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-29gn: busco: Update to 5.4.1.Efraim Flashner
2022-07-29gnu: pplacer: Fix building.Efraim Flashner
* gn/packages/ocaml.scm (ocaml4.07-lwt-5.5.0): New variable. (build-with-ocaml4.07): New procedure. * gn/packages/bioinformatics.scm (pplacer): Wrap with build-with-ocaml4.07.
2022-07-29gn: Add r-bracerEfraim Flashner
2022-07-22gn: Update gn-rust-correlationAlexander_Kabui
* gn/packages/crates-io.scm (commit): Update it. (source): Update hash. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-22gn: genenetwork2: Add gn-rust-correlation.Alexander_Kabui
* gn/packages/genenetwork.scm: (genenetwork2) [propagated-inputs]: Add gn-rust-correlations. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2022-07-11gn: tissue: Update to 0.1.0-3.6d6285d.Arun Isaac
* gn/packages/gemini.scm (tissue): Update to 0.1.0-3.6d6285d. [inputs]: Add guile-filesystem.
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