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* gn/packages/genenetwork.scm (gn-auth): Update to commit 8a20071.
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* gn/packages/globus.scm (globus-cli): New variable.
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* gn/packages/globus.scm (python-click-type-test): New variable.
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* gn/packages/globus.scm (python-globus-sdk): New variable.
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* gn/packages/genenetwork.scm (gn-auth): Update to commit 10ec3b1.
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* gn/packages/genenetwork.scm (gn-auth)[native-inputs,
propagated-inputs]: List them directly instead of using an association
list.
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* gn/packages/bioinformatics.scm (r-stitch): New variable.
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* gn/packages/bioinformatics.scm (vcfpp): New variable.
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* gn/packages/bioinformatics.scm (seqlib): New variable.
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* gn/packages/bioinformatics.scm (r-rrbgen): New variable.
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ocaml4.07-gsl-1 has been removed from upstream Guix.
* gn/packages/ocaml.scm (ocaml4.07-gsl-1): New variable.
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* gn/packages/javascript.scm (javascript-font-awesome): Update to
v4.7.0 which is the exact version we use in the genenetwork website.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* gn/packages/javascript.scm: (javascript-uikit): New package.
* gn/packages/javascript.scm: (genenetwork2) [propagated-inputs]:Add
javascript-uikit.
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* gn/packages/javascript.scm (javascript-ckeditor): Copy entire
directory structure of ckeditor to the store. ckeditor.js requires
some CSS and other js files in the unzipped source to be able to be
fully functional.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* gn/packages/genenetwork.scm (genenetwork2): Update to
3.11-4.c1d377e.
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* gn/packages/genenetwork.scm (genenetwork3): Update to
0.1.0-5.6bb4a5f.
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* gn/packages/genenetwork.scm (genenetwork2)[arguments]: Add
install-bundled-fonts and fix-font-paths phases.
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* gn/packages/genenetwork.scm (genenetwork2): Use G-expressions.
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This was introduced accidentally in
7a4bf91e019fe084f92a90535cbfffb7c119b9a7.
* gn/packages/genenetwork.scm: Remove genenetwork3 return.
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* gn/packages/genenetwork.scm (genenetwork2): Update to
3.11-3.ff67963.
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* gn/packages/file-systems.scm (lizardfs)[arguments]: updated and disabled tests in CMake
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* gn/packages/javascript.scm (javascript-ace): New package.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* gn/packages/javascript.scm (javascript-marked-highlight): New
package.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* gn/packages/javascript.scm (javascript-marked): New package.
Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* gn/packages/file-systems.scm (lizardfs)[source]: Add patch.
[arguments]: Remove trailing #t from phases.
[inputs]: Remove labels. Use fuse-2.
* lizardfs-issues-found-on-Fedora-34-using-GCC-11.patch: New file.
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* gn/packages/javascript.scm (javascript-htmx): Copy
"/dist/htmx.min.js" to the targetdir.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* genenetwork3: Remove `yoyo-migrations` as a dependency
* gn-auth: Use the upstream `yoyo-migrations`
* Remove temporary local definition for yoyo-migrations.
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Esbuild system has no support for ES5 and will lead to a build failure
with the following output:
`dist/htmx.js:1979:20: error: Transforming let to the configured target environment ("es5") is not supported yet`
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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The package is broken, some of its inputs have been removed from
upstream Guix, and we no longer need this package. Restore it later if
necessary.
* gn/packages/python.scm (python-arvados-python-client): Delete
variable.
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The package is broken, some of its inputs have been removed from
upstream Guix, and we no longer need this package.
* gn/packages/bioinformatics.scm (bh20-seq-resource): Delete variable.
* gn/services/bh20-seq-resource-container.scm: Delete file.
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* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add
python-ld.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* gn/packages/javascript.scm (javascript-htmx) [arguments]: Replace
"dist/htmx.min.js" with "dist/htmx.js" since we already are using the
minify-build-system.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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List all packages to install to hopefully fix failure in
`sanity-check` phase.
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Use updated setup.py to try and fix issues with the `sanity-check` phase.
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* Update the commit hash and the hash of the files after updating the
guix-bioinformatics channel configurations for the gn-auth channel.
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