| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-01-22 | gn: gemma-wrapper: added coreutils and note on testing | pjotrp | |
| 2022-01-22 | gn: gemma-wrapper: updated to 0.99.6 | pjotrp | |
| 2022-01-22 | gn: gemma-wrapper: updated to 0.99.6 | pjotrp | |
| 2022-01-13 | gn: quality-control: Add utf-8-lineseparator. | jgart | |
| * gn/packages/quality-control.scm: New file. | |||
| 2022-01-09 | gn: Remove upstreamed node packages | Efraim Flashner | |
| 2022-01-09 | gn: Unconditionally use current rust package. | Efraim Flashner | |
| 2022-01-09 | gn: check for new releases of gitea | Efraim Flashner | |
| 2022-01-06 | gn: genenetwork: Add diffutils | BonfaceKilz | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add diffutils. | |||
| 2022-01-05 | Revert "gn: genenetwork: Add pudb" | BonfaceKilz | |
| This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra dependency by running something like: ``` guix shell -L /home/bonface/projects/guix-bioinformatics \ -L /home/bonface/projects/guix-past/modules -C \ -D pudb -f guix.scm ``` | |||
| 2022-01-05 | gn: genenetwork: Add pudb | BonfaceKilz | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add pudb for trouble-shooting purposes. | |||
| 2022-01-01 | genenetwork3: updated and disabled tests | Pjotr Prins | |
| 2022-01-01 | genenetwork2: put a hack in to fix failing build. Please amend | Pjotr Prins | |
| 2021-12-29 | gnu: Add python2-bx-python. | Arun Isaac | |
| python2-bx-python has been removed from upstream Guix. * gn/packages/bioinformatics.scm (python2-bx-python): New variable. | |||
| 2021-12-29 | Reference non-public rust packages using @@. | Arun Isaac | |
| rust-1.47 and rust-1.49 are no longer exported from (gnu packages rust). * gn/packages/bioinformatics.scm (gfaffix): Reference rust-1.49 using @@. * gn/packages/crates-io.scm (rust-handlegraph-0.7): Reference rust-1.47 using @@. | |||
| 2021-12-29 | Fix typo in import of (gnu packages textutils). | Arun Isaac | |
| * gn/packages/genenetwork.scm: Import (gnu packages textutils), not (gn packages textutils). | |||
| 2021-12-29 | gn: ldc: Use ldc-bootstrap-0.17. | Arun Isaac | |
| Upstream has renamed ldc-bootstrap to ldc-bootstrap-0.17. * gn/packages/dlang.scm (ldc): Inherit from ldc-bootstrap-0.17 instead of ldc-bootstrap. [native-inputs]: Replace ldc-bootstrap with ldc-bootstrap-0.17. | |||
| 2021-12-21 | gn/packages/genenetwork.scm: Use csvdiff from textutils. | BonfaceKilz | |
| * gn/packages/genenetwork.scm (genenetwork2): Use updated version of csvdiff from textutils. | |||
| 2021-12-12 | gn: gitea: don't patch shebangs of repo actions | Efraim Flashner | |
| 2021-12-10 | gn: ccwl: Remove package. | Arun Isaac | |
| ccwl has been upstreamed. * gn/packages/ccwl.scm: Delete file. | |||
| 2021-12-09 | gn: genenetwork: Define version using git-version. | Arun Isaac | |
| Also, semantic versioning starts from 0.1.0, not 0.0.1. * gn/packages/genenetwork.scm (genenetwork3)[version]: Use git-version. | |||
| 2021-12-09 | gn: genenetwork: Reorganize inputs. | Arun Isaac | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Remove python-sqlalchemy-stubs. Add python-sparqlwrapper and rust-qtlreaper. Sort all inputs. | |||
| 2021-12-07 | remove pudb | jgart | |
| https://issues.guix.gnu.org/52177 | |||
| 2021-12-06 | gn: Add mutation-simulator | Efraim Flashner | |
| 2021-12-03 | add pudb | jgart | |
| 2021-12-01 | Remove julia packages: softglobalscope, jive, and millboard. | jgart | |
| I sent them to upstream: https://issues.guix.gnu.org/52213 https://issues.guix.gnu.org/52211 | |||
| 2021-11-26 | gemma-wrapper: bug fix | pjotrp | |
| 2021-11-25 | Updated gemma-wrapper | pjotrp | |
| 2021-11-19 | gnu: Add julia-jive. | jgart | |
| * gn/packages/julia.scm (julia-jive): New variable. | |||
| 2021-11-19 | gnu: Add julia-millboard. | jgart | |
| * gn/packages/julia.scm (julia-millboard): New variable. | |||
| 2021-11-19 | gnu: Add julia-softglobalscope. | jgart | |
| * gn/packages/julia.scm (julia-softglobalscope): New variable. | |||
| 2021-11-19 | gnu: Add python-requirements-parser. | jgart | |
| * gn/packages/python.scm (python-requirements-parser): New variable. | |||
| 2021-11-17 | gn: genenetwork: Add javascript-xterm , javascript-xterm-style, ↵ | Alexander Kabui | |
| javascript-xterm-addon-fit to genenetwork2 * gn/packages/genenetwork.scm(genenetwork2) [propagated-inputs]: Add javascript-xterm , javascript-xterm-style and javascript-xterm-addon-fit | |||
| 2021-11-17 | gn: javascript: Add javascript-xterm-addon-fit | Alexander Kabui | |
| * gn/packages/javascript.scm: (javascript-xterm-addon-fit): New package | |||
| 2021-11-16 | gn: metaeuk: enable tests. | Efraim Flashner | |
| 2021-11-16 | gn: Adjust to changes in julia-build-system | Efraim Flashner | |
| 2021-11-16 | gn: python-sparqlwrapper: Remove package. | Arun Isaac | |
| python-sparqlwrapper has been upstreamed. * gn/packages/python.scm (python-sparqlwrapper): Delete variable. | |||
| 2021-11-15 | gn: Add sepp, busco | Efraim Flashner | |
| 2021-11-14 | gn: Add augustus | Efraim Flashner | |
| 2021-11-14 | gn: add metaeuk | Efraim Flashner | |
| 2021-11-14 | gn: bh2-seq-resource: Update source uri, homepage | Efraim Flashner | |
| 2021-11-10 | Remove python-flask-socketio. | Arun Isaac | |
| python-flask-socketio has been upstreamed. * gn/packages/python.scm (python-flask-socketio): Delete variable. | |||
| 2021-11-08 | gn: Remove upstreamed packages. | Arun Isaac | |
| * gn/packages/python.scm (python-webcolors): Delete variable. * gn/packages/messaging.scm: Delete file. | |||
| 2021-11-05 | gn: genenetwork: Remove unused package inputs | BonfaceKilz | |
| 2021-11-05 | gn: genenetwork: Delete dead comments | BonfaceKilz | |
| 2021-11-05 | gemma-wrapper: rolling back on parallel | Pjotr Prins | |
| 2021-11-04 | gn: Update genenetwork3 to 0.0.1-guix-9e0fa5f | BonfaceKilz | |
| 2021-11-04 | gnu: Add weechat-wee-slack. | Arun Isaac | |
| * gn/packages/messaging.scm (weechat-wee-slack): New variable. | |||
| 2021-11-04 | gnu: Add weechat-matrix. | Arun Isaac | |
| * gn/packages/messaging.scm: New file. | |||
| 2021-11-04 | gnu: Add python-webcolors. | Arun Isaac | |
| * gn/packages/python.scm (python-webcolors): New variable. | |||
| 2021-11-01 | gn: Add python-pingouin | BonfaceKilz | |
| * gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add python-pingouin | |||
 |
index : guix-bioinformatics | |
| Bioinformatics packages for GNU Guix |
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