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2022-04-20Remove upstreamed packagesEfraim Flashner
2022-04-12gn: python-rpy2-next: Remove package.Alexander
python-rpy2@3.4.5 has been upstreamed. * gn/packages/python.scm (python-rpy2-next): Delete variable. * gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Replace python-rpy2-next with python-rpy2. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2022-04-04gn: packages: python: add python-supervisorjgart
todo: fix tests: https://github.com/NixOS/nixpkgs/blob/nixos-21.11/pkgs/development/python-modules/supervisor/default.nix#L16
2022-03-07python-pytest-pudb: enable testsjgart
add more to description field
2022-03-03gn: Add pytest-pudbBonfaceKilz
* gn/packages/python.scm: New package.
2021-12-07remove pudbjgart
https://issues.guix.gnu.org/52177
2021-12-03add pudbjgart
2021-11-19gnu: Add python-requirements-parser.jgart
* gn/packages/python.scm (python-requirements-parser): New variable.
2021-11-16gn: python-sparqlwrapper: Remove package.Arun Isaac
python-sparqlwrapper has been upstreamed. * gn/packages/python.scm (python-sparqlwrapper): Delete variable.
2021-11-10Remove python-flask-socketio.Arun Isaac
python-flask-socketio has been upstreamed. * gn/packages/python.scm (python-flask-socketio): Delete variable.
2021-11-08gn: Remove upstreamed packages.Arun Isaac
* gn/packages/python.scm (python-webcolors): Delete variable. * gn/packages/messaging.scm: Delete file.
2021-11-04gnu: Add python-webcolors.Arun Isaac
* gn/packages/python.scm (python-webcolors): New variable.
2021-10-27gn: python-htmlgen: Download using git-fetch.Efraim Flashner
2021-08-16gn: Add python-flask-debugtoolbar.BonfaceKilz
* gn/packages/python.scm (python-flask-debugtoolbar): New variable.
2021-06-30python gone missing conflict ;)pjotrp
2021-06-18python-rpy2-next: Update to 3.4.5BonfaceKilz
2021-05-30gn: comment out unpackaged inputsEfraim Flashner
2021-05-27gn: upstream some librariesEfraim Flashner
2021-05-24gn: visuals webservice proof-of-conceptEfraim Flashner
2021-05-13gn: python-sqlalchemy-stubs is upstream.Efraim Flashner
2021-04-23gn: python: Add python2-werkzeug.BonfaceKilz
* gn/packages/python.scm (python2-werkzeug): New variable. This was deprecated upstream.
2021-04-23gn: python: Add python2-flaskBonfaceKilz
* gn/packages/python.scm: New variable. This was deprecated upstream.
2021-04-20gn: python: Add python-rpy2-nextBonfaceKilz
2021-03-22gn: python-sqlalchemy-stubs: Add new packageBonfaceKilz
2021-03-22gn: python-ipfshttpclient: Update to v0.7.0BonfaceKilz
2021-03-08gn: python-ipfshttpclient: Make VERSON_MAXIMUM check 0.7.1BonfaceKilz
2021-03-08gn: python: Add python-ipfshttpclientBonfaceKilz
2021-03-08gn: python: Add python-multiaddr v0.0.9BonfaceKilz
2021-03-08gn: python: Add python-varint v1.0.2BonfaceKilz
2021-03-04gn: Remove two upstreamed packages.Efraim Flashner
2021-02-05gn1: make run in a containerroot
2020-11-29gn: remove unecessary importEfraim Flashner
2020-11-29gn: python-xlsxwriter available upstream.Efraim Flashner
2020-11-23upstream cwltools and dependant packagesEfraim Flashner
2020-11-21cwltools: updatedPjotr Prins
2020-11-17gn: python-flask-socketio: New inputsBonfaceKilz
* gn/packages/python.scm (python-flask-socketio): Add support for eventlet. [propagated-inputs]: Add python-dnspython, python-eventlet, python-monotonic.
2020-11-16gn: python: Add python-flask-socketioBonfaceKilz
2020-11-16gn: python: Add python-socketioBonfaceKilz
2020-11-16gn: python: Add python-engioneioBonfaceKilz
2020-11-05gn: python-schema-salad: use python-mistuneBonfaceKilz
* gn/packages/python.scm [propagated-inputs]: Replace python-mistune-2.0.0a5 with python-mistune. This is required in order to build bh20-seq-resource successfully.
2020-11-04gn: python3-genenetwork2: Rename inputBonfaceKilz
2020-10-31gn: Add new python-mistune-2.0.0a5 packageBonfaceKilz
2020-10-27gn: python2-parallel: Remove upstreamed python2 libraryBonfaceKilz
2020-10-08gn: Add new package python-rpy2-2.9BonfaceKilz
* gn/packages/python.scm (python-rpy2-2.9): Add it. Breaking changes are introduced in v3.0.0. See https://rpy2.github.io/doc/latest/html/changes.html#release-3-0-0
2020-10-08gn: Update python2-parallelBonfaceKilz
* gn/packages/python.scm (python2-parallel): Update to v1.6.6; v1.6.4 is no longer available from the website.
2020-09-27Added python testing framework packagespjotrp
2020-08-28New package python-pandas-plinkpjotrp
2020-08-09Remove upstreamed python packages.Efraim Flashner
upstreamed python-certipy, python-pamela, python-cfgraph. python-retrying already upstream
2020-08-09gn: python-schema-salad: Use same version of python-ruaml.yaml asEfraim Flashner
bh20-seq-resource
2020-08-05gn: python-htmlgen: Update to 2.0.0BonfaceKilz
* gn/packages/python.scm (python-htmlgen): [version]: Bump version to 2.0.0. [source]: Update hash. [propagated-inputs]: Remove "python-typing" since it causes errors to be raised when importing htmlgen in python3.8. Also, in Python 3.8 it's already provided by the standard library.