| Age | Commit message (Expand) | Author |
|---|
| 2022-08-30 | gn: genenetwork3: Update to 0.1.0-2.9ef2ddc....* gn/packages/genenetwork.scm (genenetwork3) Update to
0.1.0-2.9ef2ddc.
| Frederick Muriuki Muriithi |
| 2022-08-17 | gn: genenetwork2: Update to 3.11-2.bc589b2....* gn/packages/genenetwork.scm (genenetwork2) Update to
3.11-2.bc589b2.
| Frederick Muriuki Muriithi |
| 2022-08-15 | gn: genenetwork2: Update to 3.11-2.3cfd0ec....* gn/packages/crates-io.scm (genenetwork2) Update to
3.11-2.3cfd0ec.
| Frederick Muriuki Muriithi |
| 2022-08-15 | gn: genenetwork3: Update to 0.1.0-2.6db3b2a....* gn/packages/crates-io.scm (genenetwork3) Update to
0.1.0-2.6db3b2a.
| Frederick Muriuki Muriithi |
| 2022-08-02 | gn: genenetwork2: Update to 3.11-2.85ad783....* gn/packages/genenetwork.scm (genenetwork2): Update to 3.11-2.85ad783.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Frederick Muriuki Muriithi |
| 2022-07-29 | gn: genenetwork3: Update it...* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Frederick Muriuki Muriithi |
| 2022-07-22 | gn: genenetwork2: Add gn-rust-correlation....* gn/packages/genenetwork.scm:
(genenetwork2) [propagated-inputs]: Add gn-rust-correlations.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Alexander_Kabui |
| 2022-06-29 | gn: genenetwork3: Add gn-rust-correlation....* gn/packages/genenetwork.scm: Import module crates-io.
(genenetwork3) [propagated-inputs]: Add gn-rust-correlations.
| BonfaceKilz |
| 2022-06-21 | gn: genenetwork2: Update it...* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
| BonfaceKilz |
| 2022-06-21 | gn: Update genenetwork3...* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
(propagated-inputs): Remove python-ipfshttpclient.
| BonfaceKilz |
| 2022-06-14 | gn: genenetwork3: Use upstream python-pingouin....* gn/packages/genenetwork.scm (python-seaborn-without-tests,
python-pingouin-with-working-python-seaborn): Delete variables.
(genenetwork3)[propagated-inputs]: Replace
python-pingouin-with-working-python-seaborn with upstream
python-pingouin.
| Arun Isaac |
| 2022-06-10 | gn: Update genenetwork3...* gn/packages/genenetwork.scm (commit): Update it.
(source): Update hash.
(propagated-inputs): Add python-lmdb.
| BonfaceKilz |
| 2022-05-24 | New dependency: (genenetwork3: diffutils)...- Genenetwork3 depends on diffutils
| Frederick Muriuki Muriithi |
| 2022-04-14 | Update genetwork3 to 39afc68...* gn/packages/genenetwork.scm: Update commit and hash.
| BonfaceKilz |
| 2022-04-13 | Update GN3 to latest commit...GN2 on the testing branch relies on features in GN3 that are not
present in commit 16367dab9248d3aa2660e0b5cafdce25e8f7067c of
GN3. This commit thus updates the dependency to get the latest version
of GN3 that is building successfully.
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
| Frederick Muriuki Muriithi |
| 2022-04-12 | gn: python-rpy2-next: Remove package....python-rpy2@3.4.5 has been upstreamed.
* gn/packages/python.scm (python-rpy2-next): Delete variable.
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]:
Replace python-rpy2-next with python-rpy2.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander |
| 2022-03-16 | gn: genenetwork3: Update to 0.1.0-2.16367da....* gn/packages/genenetwork.scm (genenetwork3): Update to
0.1.0-2.16367da.
| BonfaceKilz |
| 2022-03-16 | gn: genenetwork2: Move pytest and pytest-mock to propagated-inputs...These packages are required in the propagated-inputs so that they can be run
locally.
* gn/packages/genenetwork.scm (genenetwork)[native-inputs]: Move pytest and
pytest to...
[propagated-inputs]: here.
| BonfaceKilz |
| 2022-03-16 | gn: genenetwork2: Add pytest and pytest-mock...* gn/packages/genenetwork.scm (genenetwork2) [native-inputs]: Add pytest and
pytest-mock
| BonfaceKilz |
| 2022-03-03 | gn: genenetwork3: Add python-pytest-mock...* gn/packages/genenetwork.scm (genenetwork3)[native-inputs]: Add
python-pytest-mock.
| BonfaceKilz |
| 2022-02-18 | gn: genenetwork2: Update to 3.11-2.17652b1....* gn/packages/genenetwork.scm (genenetwork2): Update to
3.11-2.17652b1.
[arguments]: Restore the default install phase.
| Arun Isaac |
| 2022-02-18 | gn: genenetwork3: List propagated inputs in plain list....Guix now prefers inputs as a plain list instead of an association
list. Modernize.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Use
plain list instead of association list.
| Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Remove implicit inputs....coreutils and diffutils are implicit inputs of the
python-build-system. They don't have to be included explicitly.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Remove coreutils and diffutils.
| Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Update to 0.1.0-2.83a7aa7....* gn/packages/genenetwork.scm (genenetwork3): Update to
0.1.0-2.83a7aa7.
[arguments]: Enable tests.
| Arun Isaac |
| 2022-02-18 | gn: genenetwork3: Move test inputs to native inputs....Test inputs are not required to actually run the built program. They
should therefore be in native-inputs. They should not be propagated.
* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Move
python-mypy, python-mypy-extensions, python-pylint, python-hypothesis
and python-pytest to ...
[native-inputs]: ... here.
| Arun Isaac |
| 2022-02-14 | Add pytest and hypothesis for automated testing...In the effort to improve automated testing, this commit adds two
python modules that are useful for the tests.
| Frederick Muriuki Muriithi |
| 2022-02-09 | gn: genenetwork2: Add python-ijson....* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add
python-ijson.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander Kabui |
| 2022-02-09 | gn: genenetwork3: Add r-ctl....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add
r-ctl.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
| Alexander Kabui |
| 2022-01-26 | gn: genenetwork: Disable tests on python-seaborn....* gn/packages/genenetwork.scm (python-seaborn-without-tests,
python-pingouin-with-working-python-seaborn): New variables.
(genenetwork3)[propagated-inputs]: Replace python-pingouin with
python-pingouin-with-working-python-seaborn.
| Arun Isaac |
| 2022-01-06 | gn: genenetwork: Add diffutils...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Add diffutils.
| BonfaceKilz |
| 2022-01-05 | Revert "gn: genenetwork: Add pudb"...This reverts commit f7e876d53832cf1d5d4b19118266e910e6100ea9. Add an extra
dependency by running something like:
```
guix shell -L /home/bonface/projects/guix-bioinformatics \
-L /home/bonface/projects/guix-past/modules -C \
-D pudb -f guix.scm
```
| BonfaceKilz |
| 2022-01-05 | gn: genenetwork: Add pudb...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Add pudb for trouble-shooting purposes.
| BonfaceKilz |
| 2022-01-01 | genenetwork3: updated and disabled tests | Pjotr Prins |
| 2022-01-01 | genenetwork2: put a hack in to fix failing build. Please amend | Pjotr Prins |
| 2021-12-29 | Fix typo in import of (gnu packages textutils)....* gn/packages/genenetwork.scm: Import (gnu packages textutils),
not (gn packages textutils).
| Arun Isaac |
| 2021-12-21 | gn/packages/genenetwork.scm: Use csvdiff from textutils....* gn/packages/genenetwork.scm (genenetwork2): Use updated version of csvdiff
from textutils.
| BonfaceKilz |
| 2021-12-09 | gn: genenetwork: Define version using git-version....Also, semantic versioning starts from 0.1.0, not 0.0.1.
* gn/packages/genenetwork.scm (genenetwork3)[version]: Use
git-version.
| Arun Isaac |
| 2021-12-09 | gn: genenetwork: Reorganize inputs....* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]:
Remove python-sqlalchemy-stubs. Add python-sparqlwrapper and
rust-qtlreaper. Sort all inputs.
| Arun Isaac |
| 2021-11-17 | gn: genenetwork: Add javascript-xterm , javascript-xterm-style, javascript-xt...... * gn/packages/genenetwork.scm(genenetwork2) [propagated-inputs]: Add javascript-xterm , javascript-xterm-style and javascript-xterm-addon-fit
| Alexander Kabui |
| 2021-11-05 | gn: genenetwork: Remove unused package inputs | BonfaceKilz |
| 2021-11-05 | gn: genenetwork: Delete dead comments | BonfaceKilz |
| 2021-11-04 | gn: Update genenetwork3 to 0.0.1-guix-9e0fa5f | BonfaceKilz |
| 2021-11-01 | gn: Add python-pingouin...* gn/packages/genenetwork.scm (genenetwork3)[propagated-inputs]: Add
python-pingouin
| BonfaceKilz |
| 2021-10-27 | gn: genenetwork: Add python-deprecated...Only used when deemed necessary.
| BonfaceKilz |
| 2021-10-06 | gn: Update genenetwork3 to 0.0.1-guix-77c274b | BonfaceKilz |
| 2021-09-29 | gn: Add r-wgcna, r-rjson to genenetwork3....* gn/packages/genenetwork.scm(genenetwork3) [propagated-inputs]: Add r-wgcna an r-rjson
| Alexander Kabui |
| 2021-08-28 | Moved packages into past/genenetwork1 and packages/pangenome to reduce chance of...breaking the main genenetwork packages.
| pjotrp |
| 2021-08-28 | Remove golang module loader | pjotrp |
| 2021-08-24 | genenetwork[23]: updated git checkout and commented out DAG generation | Pjotr Prins |
| 2021-08-20 | gn: Add missing import | Efraim Flashner |
