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path: root/gn/packages/genenetwork.scm
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2021-07-11Added GNU parallel to genenetwork2pjotrp
2021-06-07gn: Update genenetwork3 to 0.0.1-guix-3881b50BonfaceKilz
2021-05-27gn: Update genenetwork3 to 0.0.1-guix-cd08b40BonfaceKilz
2021-05-13gn: Update genenetwork3 to 0.0.1-guix-09f6992BonfaceKilz
2021-05-13genenetwork2: add python-configparserPjotr Prins
2021-05-13gn: Add r-qtl, r-stringi to genenetwork3.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r-qtl and r-stringi.
2021-05-12Made python3-genenetwork2 the default!Pjotr Prins
2021-05-12gn: Add r-optparse to genenetwork3BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3) [propagated-inputs]: Add r-optparse
2021-05-10gn: genenetwork: Add genenetwork3 as input.BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add genenetwork3.
2021-05-10gn: genenetwork: Remove racket-minimal from gn2 inputs.BonfaceKilz
* gn/packages/genenetwork.scm [propagated-inputs]: Remove racket-minimal.
2021-05-10gn: genenetwork: Add genenetwork3.BonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3): New variable.
2021-05-10gn: genenetwork: Add autopep8 and pylint to python3-genenetwork2.BonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Add python-autopep8 and python-pylint.
2021-04-20gn: genetwork: Propagate python-rpy2-nextBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: Use python-rpy2-next.
2021-02-05gn1: make run in a containerroot
2021-02-05Move packages to genetwork1 propagated inputsBonfaceKilz
* gn/services/genenetwork.scm: Move some package defs to ... * gn/packages/genenetwork.scm [propagated-inputs]: ... here.
2021-02-03gn: javascript: Add javascript-font-awesomeAlexander Kabui
* gn/packages/javascript.scm: (javascript-font-awesome): New package. * gn/packages/javascript.scm: (genenetwork2) [propagated-inputs]: Add javascript-font-awesome. Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-01-31gn: javascript: Replace javascript-zxcvbn-async with javascript-zxcvbnAlexander Kabui
Signed-off-by: BonfaceKilz <me@bonfacemunyoki.com>
2021-01-12gn: genenetwork1: Create "useralt" and replace "user" with itBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork1): [arguments]: In 'changes-for-deployed-service, copy "web/webqtl/user" to "web/webqtl/useralt" and replace how "user" is imported in "web/webqtl/main.py"
2020-12-15gn: rust-handlegraph-0.3, rust-ndarray-0.12 upstreamedEfraim Flashner
2020-12-06gn: python3-genenetwork2: Generate svg graph from python3-packageBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [native-inputs]: Add graphviz. [arguments]{generate-dag-svg-file}: New phase.
2020-12-06gn: python3-genenetwork2: Remove unnecessary begin formBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments] {generate-graph}: Remove begin form.
2020-12-04gn: python3-genenetwork2: Generate graph from python3-packageBonfaceKilz
* gn/packages/genenetwork.scm: Add new #:use-modules: (guix graph) (guix scripts graph) (guix store) (python3-genenetwork2)[arguments]{generate-graph}: New phase after install that uses d3js to generate a new graph which uses d3js as a backend.
2020-12-04gn: python3-genenetwork2: Add package link in generated deps fileBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add link to "genenetwork.scm" file.
2020-12-02gn: python3-genenetwork2: Generate static dependencies fileBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [arguments]{generate-dependency-file}: Add new phase after "install" that generates a "DEPENDENCY.md" file which will be displayed in the gn2 web interface.
2020-11-20gn: genenetwork2: Remove vim from propagated inputsBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2): [propagated-inputs]: Remove vim. Right now, building vim fails, thereby causing python3-genenetwork2 to fail.
2020-11-20gn: python3-genenetwork: Replace python-mistune with python-markdownBonfaceKilz
2020-11-19gn: python3-genenetwork2: Comment out python-flask-socketioBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Comment out python-flask-socketio. Causes build on Penguin2 to fail.
2020-11-17gn: python3-genenetwork2: Add python-flask-socketioBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add python-flask-socketio.
2020-11-16gn: python3-genenetwork2: Add javascript-ckeditorBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [propagated-inputs]: Add javascript-ckeditor.
2020-11-14gn: python3-genenetwork2: Add python-rdflibBonfaceKilz
2020-11-03gn: python3-genenetwork2: Add python-beautifulsoup4BonfaceKilz
* gn/packages/genenetwork.scm [propagated-inputs]: New input.
2020-10-31gn: python3-genenetwork2: Add python-mistune as an inputBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2) [propagated-inputs]: New input.
2020-10-31gn: Delete genenetwork3 packageBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork3): Delete it. The python3 version of genenetwork2 is already packaged as python3-genenetwork2.
2020-10-08gn: python3-genenetwork2: Update python-rpy2 inputBonfaceKilz
2020-09-23gn: Add python2-mysqlclient.Efraim Flashner
2020-09-23genenetwork1: Update package and serviceEfraim Flashner
2020-09-14gn: adjust to package movementsEfraim Flashner
2020-09-03gn: Provide genotypes folder in container.Efraim Flashner
2020-09-03python24-qtlreaper: Update to 1.11-gn1.442c217.Efraim Flashner
Also re-indent.
2020-09-03move python24-mysqlclient to 1.2.3.Efraim Flashner
2020-08-31gn: python3-genenetwork2: Propagate python-mypyBonfaceKilz
2020-08-28Add racket to genenetwork2pjotrp
2020-08-28Remove unused packagespjotrp
2020-08-26updatesEfraim Flashner
2020-08-20gn: python3-genenetwork2: Propagate python-rpy2BonfaceKilz
* gn/packages/genenetwork.scm: (python3-genenetwork2)[propagated-inputs]: Add python-rpy2
2020-08-19gn: Add gfautil.Efraim Flashner
2020-08-18genenetwork1: patch more filesEfraim Flashner
2020-08-18gn: Use local links for genenetwork1.Efraim Flashner
2020-08-10gn: genenetwork2: Add pillow as one of the propagated-inputsBonfaceKilz
* gn/packages/genenetwork.scm (genenetwork2)[propagated-inputs]: Add python2-pillow
2020-08-05gn: python3-genenetwork2: Update package definitionBonfaceKilz
* gn/packages/genenetwork.scm (python3-genenetwork2): [source]: Use github source tree to avoid build failures in `setup.py` which used old python 2 syntax. [propagated-inputs]: Use python-wrapper that maps `python3` command to `python`. Remove "python" from inherited propagated input. Remove unittest2 and mock inputs since they are already defined in python3's standard library. [arguments]: Inherit package arguments from genenetwork2 and only update '#phases and '#python args.
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-14 04:07:11 +0000